Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq2855 257 2e-63 seq23 147 3e-30 >seq2855 Length=12074 Score = 257 bits (284), Expect = 2e-63 Identities = 598/894 (67%), Gaps = 12/894 (1%) Strand=Plus/Plus Query 35866 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 35925 ||||||||| || | || || ||||| || || ||||| || |||| | || || | Sbjct 4920 TTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCAT 4979 Query 35926 TTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAATCCCA-ATTCAGAAA 35984 ||||||||||||||||| ||| | || | |||| ||| || || | | || ||| Sbjct 4980 ATCCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTGGAGAAGCCAAGAGACA-AAA 5038 Query 35985 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 36044 ||| | || || |||||||| || || ||| | | | |||||||||||||| Sbjct 5039 GCAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAA 5098 Query 36045 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 36104 | || || | | |||| | ||||||||||| || | || ||||| | | || Sbjct 5099 GAGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAA 5158 Query 36105 TAGATATTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 36164 | | || || ||||||||| ||| | | | | ||| |||| | || ||| Sbjct 5159 TGGCTAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGGCAGCCGA 5218 Query 36165 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 36224 ||||| ||| ||||| || ||||||| || | |||||| || || || || ||||||| Sbjct 5219 AATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGGCA 5278 Query 36225 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 36284 | |||||||||||||| ||||| || |||| || || || ||| ||||| || |||| Sbjct 5279 TAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCCTT 5338 Query 36285 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCACT 36341 |||| | ||| ||| | ||| || ||| | | || ||||| ||||| | Sbjct 5339 CTACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTTTTTCTAGAGTCATCAATCCATT 5398 Query 36342 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 36401 | ||||| | ||||| || |||| || || || | | || ||||| | | Sbjct 5399 CAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGAGTAAGA 5458 Query 36402 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 36461 ||| | ||||| | ||||||| | ||||| ||||| | | | |||||||| | Sbjct 5459 AGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAGTACATTTCGCTGT 5518 Query 36462 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 36521 | || |||||||| ||||| || ||||| ||||| | || || | || || |||| Sbjct 5519 GGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGATTTGGACTT 5578 Query 36522 CTGTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 36579 | |||| ||| ||| | | | ||||| || || || || ||||| || || || || Sbjct 5579 CGGTACCAAA--GTTAGCGACAAGGTTTTCGTTGACGATACCATCACTAGCAGCGAAGAA 5636 Query 36580 CGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTTAG--TTTATTCCAATCATTG 36637 || | | | ||| || ||||| ||||||| ||||| | | |||| | ||| Sbjct 5637 GGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCCCAGTGTTG 5696 Query 36638 A-TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 36696 | | || | ||| | ||| |||||||| || ||||| || || || || ||||| || Sbjct 5697 AGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCTTTTTTGTA 5756 Query 36697 CATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTTGATT 36750 ||| | ||| || || || ||| ||||| || | ||||| |||||| |||| Sbjct 5757 CATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTATTTGGATT 5810 >seq23 Length=21893 Score = 147 bits (162), Expect = 3e-30 Identities = 569/881 (65%), Gaps = 21/881 (2%) Strand=Plus/Plus Query 65790 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 65849 || |||||||| || || | || || ||||| | |||||||| ||| || | Sbjct 4514 ATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACCG 4573 Query 65850 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 65909 |||||||| || || || || ||| |||||||||||||||| ||||| || |||| || Sbjct 4574 TTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGATA 4633 Query 65910 GCTTTCCAGACGACTCGAGCCTTTATTA--TAGATTTGTATCTCTTTTCTCTTT-CGTA- 65965 || | ||||| | || | || | | | | ||| | ||| |||| Sbjct 4634 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTTTTCGTAC 4693 Query 65966 --TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTCA 66023 ||| ||| | || | |||||| || |||||||| | | | |||||| |||| Sbjct 4694 TTTAG-GTAGAGC-TCAT-CGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGCTTCA 4750 Query 66024 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 66083 | || || | || ||||| || |||| ||| || || ||| || || |||||| Sbjct 4751 TGAGGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGA 4810 Query 66084 ATCCAAAGAGCTATA-AATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 66142 |||||||| || || || || || | || | || ||| || || || ||| ||| | Sbjct 4811 ATCCAAAG-GCCGTAGAACAAGTCACGGGCGCGATTTTCTTCTTTACCGTGATTTTTTCT 4869 Query 66143 AAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATAACTCC 66202 | | | || | | ||| ||| ||||||| ||||| | || ||||| | | || Sbjct 4870 CAAGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGAAGGCGCC 4929 Query 66203 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 66262 || |||||||| || || ||||| | ||||| |||||| | || | ||| | ||| Sbjct 4930 TGGACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTGGAGCAT 4989 Query 66263 TGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAAT 66322 ||||| || || ||||| ||||| || || || | || ||| ||| |||| || || Sbjct 4990 TGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTTGCGCGGAT 5049 Query 66323 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 66382 ||| || || || ||||| || || ||| || ||| || || | | Sbjct 5050 ATTGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACACTGGGAGAT 5109 Query 66383 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 66442 |||||||| || || || ||| ||||| ||| | || | |||||| || | Sbjct 5110 AGTATCATAAATACCTTCGATAGAGTCATCTTGCATTGTTAGCAAGAAACAG---GAGCT 5166 Query 66443 TTGGTGA---CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTT 66499 | | ||| ||| ||||||| | || || | ||||||||| || || ||||| | Sbjct 5167 TAGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGTAAAAAAGCG 5226 Query 66500 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC--T 66557 || || | || | ||| || | || || || | | ||| ||| || || | Sbjct 5227 TTGGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCACCATGGATACCAAT 5286 Query 66558 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 66617 ||| ||| ||||| | | || ||||||||||||| ||| || | | ||| | Sbjct 5287 ACT--GACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAACTTTGAGA 5344 Query 66618 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 66658 | ||| ||| |||| | ||||| |||||||| ||||| || Sbjct 5345 AGGTAAGATCTTTCGAGGGTTTTGAAACCAAAGTAGTTATA 5385 Score = 87.8 bits (96), Expect = 2e-12 Identities = 333/520 (64%), Gaps = 11/520 (2%) Strand=Plus/Plus Query 64820 TATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATA 64879 || ||||| | ||| | ||||||| || | | ||| || || || || | || || Sbjct 3409 TACTTTATTATGGTCGATAGTGAATTTGATAGCATCGGCAGCAGGCTTGGTTCTGAGGTA 3468 Query 64880 GTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA 64939 |||||| || || || | || |||| || ||||| ||||| || ||||| Sbjct 3469 GTACATGCCTGTCTTCAATCCTTTCTTCCAGCCATAAAAGTGCATCGAAGTGAGTTTTTG 3528 Query 64940 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 64999 ||| | || | | || || ||||| | ||||| |||||||||||| | ||||| | Sbjct 3529 GTAATTTGGGTTGTCCATGTGAATATTGAGGGATTGGCTTTGATCGATGTAAGCTCCGCG 3588 Query 65000 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCG 65059 |||||||| | | |||||| | |||||| |||||| ||| |||||| || | | | Sbjct 3589 GTCTGCAGAAAGATCTATGATAGACTTTTGCTTAATTTCATAAACAGTTTTGTAGAGTTG 3648 Query 65060 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATGGATCCACCATCTGCCATAATCCT 65116 || | || ||||| | | | | | | || || |||||| | || || || Sbjct 3649 TTTCAAGTCATCTGGGATTTGGGGAAGTGCTTGGATAGATCCATTGTGAGCGATTAT--- 3705 Query 65117 ATTCTTGA----TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 65172 || |||| | |||||| ||| || | | |||| | | | | | Sbjct 3706 -TTGTTGACGGGTGTCATCAGACCACAAACCGCGTTTTACTAAATCACGCAATAACCAAG 3764 Query 65173 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 65232 | |||||||| || |||||||||| | || | ||||||||||| || ||| |||| Sbjct 3765 GGTTAACTACCTGGAATTCTCCAGCAAGAACGCGACGAGTGTAAATGTTTGAGGTGTACG 3824 Query 65233 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 65292 | || | | || || ||||||||||| | || || || || ||||| || || | Sbjct 3825 GCTCAAAGCATTCGTTGAAGCCCAAAATTTGGGATGTGGAGGCTGTAGGCATGGGAGCGA 3884 Query 65293 CCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 65332 || | ||||| | |||||| || |||| || || Sbjct 3885 GCAGGAGGGAGTTTCTGACGCCGTATTTTTTGATGTTTTC 3924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658122309919080