Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq2855 268 1e-66 seq23 165 1e-35 >seq2855 Length=12074 Score = 268 bits (296), Expect = 1e-66 Identities = 604/899 (67%), Gaps = 14/899 (2%) Strand=Plus/Plus Query 49668 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 49727 ||||||||| || | || || ||||| || || ||||| || |||| || || || | Sbjct 4920 TTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCAT 4979 Query 49728 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA-ATTCAGAAA 49786 ||||||||||| || || ||||| || | |||| ||| || || | | || ||| Sbjct 4980 ATCCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTGGAGAAGCCAAGAGACA-AAA 5038 Query 49787 TCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 49846 ||| | || || |||||||| || || ||| | | | |||||||||||||| Sbjct 5039 GCAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAA 5098 Query 49847 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 49906 | || || | | |||| | ||||||||||| |||| || || || | | || Sbjct 5099 GAGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAA 5158 Query 49907 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 49966 | | | | ||||||||| ||| | | | | ||| |||| | || ||| Sbjct 5159 TGGCTAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGGCAGCCGA 5218 Query 49967 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 50026 ||||| ||| ||||| || ||||||| || |||||||| || || || || ||||||| Sbjct 5219 AATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGGCA 5278 Query 50027 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTT 50086 | |||||||||||||| ||||| || |||| || || || ||| ||||| || |||| Sbjct 5279 TAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCCTT 5338 Query 50087 CTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCT---GTCATGTATCCACT 50143 |||| | ||| ||| | | ||| || ||| | || || ||||| ||||| | Sbjct 5339 CTACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTTTTTCTAGAGTCATCAATCCATT 5398 Query 50144 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 50203 | ||||| | ||||| || |||| || || || ||| || |||||| | | Sbjct 5399 CAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGAGTAAGA 5458 Query 50204 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 50263 ||| | ||||| | ||||||| | || || || || | | | |||||||| | Sbjct 5459 AGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAGTACATTTCGCTGT 5518 Query 50264 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTT 50323 | || |||||||| || || || ||||| ||||| | || || | || || |||| Sbjct 5519 GGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGATTTGGACTT 5578 Query 50324 CTGTACAAAATCGTTCAGCTAAA---TTTTCATTCACTATTCCGTCACTGGCTGCAAAAA 50380 | |||| ||| ||| ||| | | ||||| || || || || ||||| || || || | Sbjct 5579 CGGTACCAAA--GTT-AGCGACAAGGTTTTCGTTGACGATACCATCACTAGCAGCGAAGA 5635 Query 50381 ACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAG--TTTATTCCAATCATT 50438 | || | | | ||| || |||| ||||||| ||||| | | |||| | || Sbjct 5636 AGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCCCAGTGTT 5695 Query 50439 GA-TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497 || | || | ||| | ||| |||||||| || ||||| || || || || ||||| | Sbjct 5696 GAGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCTTTTTTGT 5755 Query 50498 ACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 50556 |||| | ||| || || || ||| |||||||| | ||||| ||||||||||| ||| Sbjct 5756 ACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTATTTGGATTGGGT 5814 >seq23 Length=21893 Score = 165 bits (182), Expect = 1e-35 Identities = 566/876 (65%), Gaps = 11/876 (1%) Strand=Plus/Plus Query 79669 ATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 79728 ||||||||||| ||||| | ||||| ||||| | |||||||| ||| || | Sbjct 4514 ATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACCG 4573 Query 79729 TTACACGCATCCTTATAAAGAATGAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 79788 |||||||| || || || || ||| | |||||||||||||| ||||| || |||| || Sbjct 4574 TTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGATA 4633 Query 79789 GCTTTCCAGACGACTCGAGCCTTTATTA--TAGACTTGTATCTCTTTTCTCTTT-CGTAT 79845 || | ||||| | || | || | | | | ||| | ||| |||| Sbjct 4634 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTTTTCGTAC 4693 Query 79846 TGTGTATATAATCGTTCGAACTCGTCTCCCCAAACATCGTCTAATCCAGGACATTCGTCA 79905 | | || | ||||||| || |||||||| || ||| |||||| ||| | | Sbjct 4694 TTTAGGTAGAGCTCATCGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGCTTCATGA 4753 Query 79906 GGACACATCAACGACCACTCTCCATCATCCTTTACTCGTTTCATAAAGAGATCAGGAATC 79965 || || | || ||||| || || | ||| || || ||| || || ||||||||| Sbjct 4754 GGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAATC 4813 Query 79966 CAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAAG 80024 ||||| | || || || || | || | || || || || || ||| ||| | | Sbjct 4814 CAAAGGCCGTAGAACAAG-TCACGGGCGCGATTTTCTTCTTTACCGTGATTTTTTCTCAA 4872 Query 80025 ATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCGG 80084 | | || | | ||| ||||||||||| ||||| | || ||||| | | || || Sbjct 4873 GTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGAAGGCGCCTGG 4932 Query 80085 TCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 80144 |||||||| || || ||||| | ||||| |||||| | || | ||| | |||||| Sbjct 4933 ACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTGGAGCATTGG 4992 Query 80145 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 80204 || || || ||||| ||||| || || || | || ||| ||| | || || ||||| Sbjct 4993 AACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTTGCGCGGATATT 5052 Query 80205 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 80264 || || || ||||| || || ||| || ||| || || | | || Sbjct 5053 GTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACACTGGGAGATAGT 5112 Query 80265 ATCATAGATGCCCTCTATGCTATCATCAATCATGTTAAGTAGAAAACAGCTAGACATTTG 80324 |||||| || || || || ||||| ||| | || | |||||| || || | Sbjct 5113 ATCATAAATACCTTCGATAGAGTCATCTTGCATTGTTAGCAAGAAACAG---GAGCTTAG 5169 Query 80325 GTGA---CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTC 80381 ||| ||| ||||||| | || || | ||||||||| || || ||||| | || Sbjct 5170 CTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGTAAAAAAGCGTTG 5229 Query 80382 AGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGAATTCCTACCGC 80441 |||| || | ||| || | || || |||| | ||| ||| || || | Sbjct 5230 GGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCACCATGGATACCAATACT 5289 Query 80442 GACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTA 80501 ||| ||||| | | || ||||||||||||| ||| || || | ||| | | ||| Sbjct 5290 GACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAACTTTGAGAAGGTA 5349 Query 80502 AGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 80537 |||| |||| | ||||| |||||||| ||||| || Sbjct 5350 AGATCTTTCGAGGGTTTTGAAACCAAAGTAGTTATA 5385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718213699804680