Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq2855 206 3e-48 >seq2855 Length=12074 Score = 206 bits (228), Expect = 3e-48 Identities = 576/865 (67%), Gaps = 29/865 (3%) Strand=Plus/Plus Query 13368 TTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTTACCTTCCAGTGATATATT 13427 |||||| || || || || | |||||||| |||||||| || |||| || || || | Sbjct 4920 TTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCAT 4979 Query 13428 TTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATCACAA-CCTAGTTCTAATA 13486 ||||| ||||||||||| || || ||| | | | || | || || || || | Sbjct 4980 ATCCATGAAATCGAATGGGTTGGT-GACGTGATAATGTTTGGAGAAGCCAAGAGACAAAA 5038 Query 13487 ATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATCACAATTCATACCTATTA 13546 || | ||||||| ||| ||||| || || ||||||| | | |||||| ||||| | Sbjct 5039 GCAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAA 5098 Query 13547 GTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGACACAGCCTCGTTTATAA 13606 | ||||| | | | |||||| ||||||| |||||| | || || || | || Sbjct 5099 GAGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAA 5158 Query 13607 TAATCTTA-ATAATGTCATTAGAAGGAGGATATTTT----AGATGTTTAAAAATTAAACA 13661 | || | || | || | |||||| | | || || | ||| || | || || Sbjct 5159 TGG-CTAATATCGTTTCTTCAGAAGG----TTTGTTGACGAGGTATTTGAACAATAGGCA 5213 Query 13662 CGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAATCC 13721 | ||||| ||||| || |||||||||| |||||||||||||| || || | || Sbjct 5214 GCCGAAATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACC 5273 Query 13722 TGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAATAT 13781 ||||| | || || ||||| | ||| || || || ||||| || || |||||||| Sbjct 5274 GGGCATAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATAT 5333 Query 13782 TCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTT--TTGTTTGAT 13839 || || || || ||| || | || ||| ||||| |||||| | | | || Sbjct 5334 GCCTTCTACGACACAAAAAGCAGCCAATCTTTCACCAAA----GCTTTTTCTAGAGTCAT 5389 Query 13840 --ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCAT 13897 ||||||| ||||| | || ||||| || || | || ||| | |||| Sbjct 5390 CAATCCATTCAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCAT 5449 Query 13898 TGAATAA-ATGT-TCCTTC-TCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTAT 13954 ||| ||| | || || ||| | ||| | ||| |||||||| |||||||| | | Sbjct 5450 TGAGTAAGAAGTCTCTTTCAACATTA-TCTTTG--ATGTATGTGTCAATAAGCATAGAGT 5506 Query 13955 ACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTG 14014 ||||||| ||| || ||||| || ||| || ||||| |||||||| | ||||||| Sbjct 5507 ACATTTCGCTGTGGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTG 5566 Query 14015 ACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAG 14074 ||| || || | ||| | | | | |||||| || || ||||||||||||| Sbjct 5567 GGATTTGGACTTCGGTACCAAAGTTAGCGACAAGGTTTTCGTTGACGATACCATCACTAG 5626 Query 14075 CTGCAAAAAATGCCAATATGTTTTTAATAAAGTATTGCTCTTCAT-TGTT-GAGTTTTTT 14132 | || || || || | |||||||| || || || || | || ||| | | |||| Sbjct 5627 CAGCGAAGAAGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTT 5686 Query 14133 CCAATCGGCTA-AATCCTTAGAAAGATCTACTTCATCAACTGTCCAAAAACTAGCGACAG 14191 || | | | || | ||| ||||| ||||| ||||| ||||| ||||| || ||| Sbjct 5687 CCCAGTGTTGAGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAG 5746 Query 14192 CTTTTTTATACATTACCCATATTTC 14216 ||||||| |||||| ||||||||| Sbjct 5747 CTTTTTTGTACATTTGCCATATTTC 5771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478552086256680