Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq2855 264 2e-65 seq23 141 1e-28 >seq2855 Length=12074 Score = 264 bits (292), Expect = 2e-65 Identities = 603/899 (67%), Gaps = 14/899 (2%) Strand=Plus/Plus Query 41773 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCTTCCAATGATATATT 41832 ||||||||| || | || || ||||| || || |||||||| |||| || || || | Sbjct 4920 TTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCAT 4979 Query 41833 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA-ATTCAGAAA 41891 ||||||||||| || || ||||| || | |||| ||| || || | | || ||| Sbjct 4980 ATCCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTGGAGAAGCCAAGAGACA-AAA 5038 Query 41892 TCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 41951 ||| | || || | ||||| || || ||| | | | |||||||||||||| Sbjct 5039 GCAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAA 5098 Query 41952 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 42011 | || || | | |||| | ||||||||||| || | || ||||| | | || Sbjct 5099 GAGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAA 5158 Query 42012 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 42071 | | | || ||||||||| ||| | | | | ||| |||| | || ||| Sbjct 5159 TGGCTAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGGCAGCCGA 5218 Query 42072 AATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 42131 ||||| ||| ||||| |||||||||| || | |||||| || || || || ||||||| Sbjct 5219 AATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGGCA 5278 Query 42132 TTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTT 42191 | |||||||||||||| ||||| || || | || || || ||| ||||| || |||| Sbjct 5279 TAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCCTT 5338 Query 42192 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACT---GTCATGTATCCACT 42248 |||| | ||| ||| | ||| || ||| | | || ||||| ||||| | Sbjct 5339 CTACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTTTTTCTAGAGTCATCAATCCATT 5398 Query 42249 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 42308 | ||||| | ||||| || |||| || || || ||| || |||||| | | Sbjct 5399 CAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGAGTAAGA 5458 Query 42309 AGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTTCTGAAT 42368 ||| | ||||| | ||||||| | ||||| || || | | | |||||||| | Sbjct 5459 AGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAGTACATTTCGCTGT 5518 Query 42369 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGGTAACCTGTACTT 42428 | || |||||||| || || || ||||| ||||| | ||| || | | || |||| Sbjct 5519 GGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGATTTGGACTT 5578 Query 42429 CTGTACAAAATCGTTCAGCTAAA---TTTTCGTTCACTATTCCGTCACTGGCTGCAAAAA 42485 | |||| ||| ||| ||| | | |||||||| || || || ||||| || || || | Sbjct 5579 CGGTACCAAA--GTT-AGCGACAAGGTTTTCGTTGACGATACCATCACTAGCAGCGAAGA 5635 Query 42486 ACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA--ATTTATTCCAATCATT 42543 | || | | | ||| || ||||| |||||| |||| | | |||| | || Sbjct 5636 AGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCCCAGTGTT 5695 Query 42544 GA-TATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCTGCCTTTTTAT 42602 || | || | ||| | ||| |||||||| || ||||| || ||||| || ||||| | Sbjct 5696 GAGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCTTTTTTGT 5755 Query 42603 ACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTTGGATTTGGT 42661 |||| | ||| || || || ||| |||||||| | ||||| ||||||||||| ||| Sbjct 5756 ACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTATTTGGATTGGGT 5814 >seq23 Length=21893 Score = 141 bits (156), Expect = 1e-28 Identities = 562/877 (64%), Gaps = 13/877 (1%) Strand=Plus/Plus Query 71752 ATTTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 71811 ||||||||||| || || | || || ||||| | |||||||| ||| || | Sbjct 4514 ATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACCG 4573 Query 71812 TTACACGCATCCTTATAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCTATAATC 71871 |||||||| || || || || || | |||||||||||||| ||||| || |||| || Sbjct 4574 TTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGATA 4633 Query 71872 GCTTTCCAGACGACTCGAGCCTTTATTATATT-CTTGTATCTCTTT---TCTCTTTCGTA 71927 || | ||||| | || | || || | | | | || | | ||||||| Sbjct 4634 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGT-TTTCGTA 4692 Query 71928 TTGTGTATATAATCGTTCGAACTCGTCTCCCCAAGCATTGTCTAATCCAGGACATTCATT 71987 | | || | ||||||| || |||||| | | ||| |||||| ||||| Sbjct 4693 CTTTAGGTAGAGCTCATCGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGCTTCATG 4752 Query 71988 CGGACACATCAATGACCACTCTCCATCATCATTTACTCGTTTCATAAAGAGATCAGGAAT 72047 || || | |||||||| || || | || || || ||| || || |||||||| Sbjct 4753 AGGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAAT 4812 Query 72048 CCAAAGAGC-TATAAATAGATCTCTGGTTCTATGCTCCTCGTTTCCTGTATTCTTTTTAA 72106 |||||| | || || || || | || | || || || || || ||| ||| | | Sbjct 4813 CCAAAGGCCGTAGAACAAG-TCACGGGCGCGATTTTCTTCTTTACCGTGATTTTTTCTCA 4871 Query 72107 GATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCCG 72166 | | || | | ||| ||||||||||| ||||| | || ||||| | | || | Sbjct 4872 AGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGAAGGCGCCTG 4931 Query 72167 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 72226 | |||||||| || || ||||| | ||||| |||||| | || | ||| | ||||| Sbjct 4932 GACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTGGAGCATTG 4991 Query 72227 GAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATAT 72286 ||| || || ||||| | ||| || || || | || ||| ||| | || || |||| Sbjct 4992 GAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTTGCGCGGATAT 5051 Query 72287 TGCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACG 72346 || || || || ||||| || || ||| || ||| || || | | | Sbjct 5052 TGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACACTGGGAGATAG 5111 Query 72347 TATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACATTT 72406 ||||||| || || || ||| ||||| ||| | || | |||||| || || Sbjct 5112 TATCATAAATACCTTCGATAGAGTCATCTTGCATTGTTAGCAAGAAACAG---GAGCTTA 5168 Query 72407 GGTGA---CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTT 72463 | ||| ||| ||||||| | || || | ||||||||| || || ||||| | || Sbjct 5169 GCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGTAAAAAAGCGTT 5228 Query 72464 CAGACAGTAGATTGTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCG 72523 |||| || | ||| || | || || |||| | ||| ||| || || | Sbjct 5229 GGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCACCATGGATACCAATAC 5288 Query 72524 CGACACGCATTAACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGT 72583 ||| ||||| | | | ||||||||||||| ||| || || | ||| | | || Sbjct 5289 TGACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAACTTTGAGAAGGT 5348 Query 72584 AGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 72620 | ||| |||| | ||||| |||||||| ||||| || Sbjct 5349 AAGATCTTTCGAGGGTTTTGAAACCAAAGTAGTTATA 5385 Score = 93.3 bits (102), Expect = 6e-14 Identities = 276/423 (65%), Gaps = 11/423 (3%) Strand=Plus/Plus Query 70837 AGATAGTACATGCCTGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGT 70896 || |||||||||||||| || | || |||| || ||||| ||||| || ||| Sbjct 3464 AGGTAGTACATGCCTGTCTTCAATCCTTTCTTCCAGCCATAAAAGTGCATCGAAGTGAGT 3523 Query 70897 TTGGAATAGCTAGGATCGGCTATGTGAATATTCATCGACTGACTTTGATCGATGAAGGCT 70956 || || | || | | | ||||||||||| | || || |||||||||||| | ||| Sbjct 3524 TTTTGGTAATTTGGGTTGTCCATGTGAATATTGAGGGATTGGCTTTGATCGATGTAAGCT 3583 Query 70957 CCCCTGTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAA 71016 || | |||||||| | | |||||| | |||||| |||||| ||| |||||| || Sbjct 3584 CCGCGGTCTGCAGAAAGATCTATGATAGACTTTTGCTTAATTTCATAAACAGTTTTGTAG 3643 Query 71017 ACTCGCTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATGGATCCACCATCTGCAATA 71073 | | | || | || ||||| | | | | | | || || |||||| | || || Sbjct 3644 AGTTGTTTCAAGTCATCTGGGATTTGGGGAAGTGCTTGGATAGATCCATTGTGAGCGATT 3703 Query 71074 ATCCTATTTTTGA----TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAG 71129 || || |||| | || ||| ||| || | | |||| | | | | Sbjct 3704 AT----TTGTTGACGGGTGTCATCAGACCACAAACCGCGTTTTACTAAATCACGCAATAA 3759 Query 71130 ATGAGGATTAACTACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGT 71189 ||| |||||||| || |||||||||| | || | |||||||||||| || ||| Sbjct 3760 CCAAGGGTTAACTACCTGGAATTCTCCAGCAAGAACGCGACGAGTGTAAATGTTTGAGGT 3819 Query 71190 ATACGGTTCCACTGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGG 71249 ||||| || | | || || ||||||||||| | || || || || ||||| || Sbjct 3820 GTACGGCTCAAAGCATTCGTTGAAGCCCAAAATTTGGGATGTGGAGGCTGTAGGCATGGG 3879 Query 71250 TGC 71252 || Sbjct 3880 AGC 3882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671087715234120