Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5784 89.7 4e-13 seq2842 89.7 4e-13 >seq5784 Length=6787 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||| || |||||||| ||||| || | | || | | || || Sbjct 534 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCT 593 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || || ||||| ||| |||| | | |||||||| || | || || || || | Sbjct 594 AGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 653 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||||| || | ||| || ||| || || ||||| ||| ||||||||| Sbjct 654 ATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTA 713 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATTTTAA 19046 ||||| | ||| || |||||||| |||||| ||| Sbjct 714 CCTGTAAGAGTCTTTACAAAAATCTGCATTCTAA 747 >seq2842 Length=19016 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| | ||||| || |||||||| ||||| || | | || | | || || Sbjct 535 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCT 594 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || || ||||| ||| |||| | | |||||||| || | || || || || | Sbjct 595 AGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 654 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| ||||| || | ||| || ||| || || ||||| ||| ||||||||| Sbjct 655 ATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTA 714 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCATTTTAA 19046 ||||| | ||| || |||||||| |||||| ||| Sbjct 715 CCTGTAAGAGTCTTTACAAAAATCTGCATTCTAA 748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414541792156978