Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq5784 107 1e-18 seq2842 107 1e-18 seq253 95.1 9e-15 seq4232 87.8 1e-12 >seq5784 Length=6787 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || ||||||||||| || || ||| ||| || |||| || Sbjct 534 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCT 593 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| || || ||||| ||||| |||||||| || |||| | ||||| |||||| | Sbjct 594 AGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 653 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||||||||| || | | | || ||| | | || || |||| || || |||||| Sbjct 654 ATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTA 713 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||| ||||| || ||||| Sbjct 714 CCTGTAAGAGTCTTTACAAAAATCTGCAT 742 >seq2842 Length=19016 Score = 107 bits (118), Expect = 1e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 43913 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCC 43972 ||||| || || || ||||||||||| || || ||| ||| || |||| || Sbjct 535 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCT 594 Query 43973 AATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAA 44032 | ||| || || ||||| ||||| |||||||| || |||| | ||||| |||||| | Sbjct 595 AGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGA 654 Query 44033 ATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTA 44092 ||||||||||| || | | | || ||| | | || || |||| || || |||||| Sbjct 655 ATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTA 714 Query 44093 CCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || || | |||||| ||||| || ||||| Sbjct 715 CCTGTAAGAGTCTTTACAAAAATCTGCAT 743 >seq253 Length=26518 Score = 95.1 bits (104), Expect = 9e-15 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 43906 TCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTC 43965 ||||| ||||| || || || || ||||| || ||||| ||| | ||| | Sbjct 7827 TCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAGAGGGTACGGCC 7768 Query 43966 ATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTT 44025 ||| |||||||| || ||||| || || | | |||||| || |||| | ||||| || Sbjct 7767 ATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTT 7708 Query 44026 ATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAAT 44085 |||| || ||||||||||| | | | | || | | || || |||| ||||| Sbjct 7707 ATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAAT 7648 Query 44086 TGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 |||||||||||||| || || ||||| || |||||| Sbjct 7647 AGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATG 7611 >seq4232 Length=1601 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | |||||| || || || |||||||| || || || ||| Sbjct 282 ACCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGA 223 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| | || || | |||||| || ||||| || | |||||||||||| | || Sbjct 222 CAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGG 163 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||| || || ||||| | ||| ||| || | | || || Sbjct 162 GATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGAC 103 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || |||| |||||| || || |||||||| Sbjct 102 TTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | ||||||||| || || |||||||| || || ||||| Sbjct 738 ACCACCTCTAAGACGAAGCACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGA 679 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| | || || | |||||| || ||||| || | ||||||||||| | || Sbjct 678 CAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGG 619 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||| || || ||||| | ||| ||| || | | || || Sbjct 618 GATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGAC 559 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || |||| |||||| || || |||||||| Sbjct 558 TTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 511 Score = 82.4 bits (90), Expect = 5e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||| | | | |||||| || || || |||||||| || || || ||| Sbjct 510 ACCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGA 451 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || ||| | || || | |||||| || ||||| || | ||||||||||| | || Sbjct 450 CAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGG 391 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||| || ||| ||| || || ||||| | ||| ||| || | | || || Sbjct 390 GATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGAC 331 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || || || |||| |||||| || || |||||||| Sbjct 330 TTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354751064520276