Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq4232 96.9 3e-15 seq5784 89.7 4e-13 seq2842 89.7 4e-13 seq253 84.2 2e-11 >seq4232 Length=1601 Score = 96.9 bits (106), Expect = 3e-15 Identities = 195/283 (69%), Gaps = 6/283 (2%) Strand=Plus/Minus Query 19932 Gtttaattta-ataaattttattat-aaaatttaaat--atatttta-tc-attttCCTC 19985 ||||| || | | |||||| | ||| ||||| |||| ||| | || || ||| || | Sbjct 793 GTTTATTTGATAAAAATTTAACTATCAAAATGTAAAAGGATAATATAGTCTATTGACCAC 734 Query 19986 CTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAG 20045 ||| | | | ||||||||| || |||||||||||||| ||||||||||| || || Sbjct 733 CTCTAAGACGAAGCACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGACAAAG 674 Query 20046 TTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGC 20105 | ||||| | ||||||||| ||| | || || | || || || || | | Sbjct 673 TACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTC 614 Query 20106 CTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCA 20165 |||| ||||| ||| || || || || | | ||| || ||| || ||| ||| | Sbjct 613 CTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAA 554 Query 20166 CGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||||||| ||||| || | || || || || |||||||| Sbjct 553 GGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 511 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || |||||||||||||| |||||||| ||| || ||| ||||| Sbjct 492 CACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCTTC 433 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||||||||| ||| | || || | || || || || | ||||| ||||| Sbjct 432 AAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTG 373 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || || || || | | ||| || ||| || ||| ||| | ||||||||| || Sbjct 372 AATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTT 313 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || | || || || || |||||||| Sbjct 312 GCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 |||||| || || |||||||||||||| || ||||| ||| || ||| ||||| Sbjct 264 CACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGTACGGCCGTCTTC 205 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||||||||| ||| | || || | || || || || | ||||| ||||| Sbjct 204 AAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTG 145 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| || || || || | | ||| || ||| || ||| ||| | ||||||||| || Sbjct 144 AATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTT 85 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||| || | || || || || |||||||| Sbjct 84 GCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 >seq5784 Length=6787 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || |||||||||||||| |||||||| ||| | || |||||| Sbjct 534 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCT 593 Query 20060 AATTGTTTGCCCGCATAAAT-AAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||| || || ||| |||| |||| | || ||||| || | ||||| || || Sbjct 594 AGTTGCTTACCGGCAAAAATCAAGCGT-TGCTGATCTGGAGGAATTCCTTCCTTATCTTG 652 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 |||||||||||| || | | | |||||| || ||| ||| | ||| |||||||| Sbjct 653 AATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTT 712 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | || || |||||||| |||||| Sbjct 713 ACCTGTAAGAGTCTTTACAAAAATCTGCATT 743 >seq2842 Length=19016 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || |||||||||||||| |||||||| ||| | || |||||| Sbjct 535 ACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCT 594 Query 20060 AATTGTTTGCCCGCATAAAT-AAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||| || || ||| |||| |||| | || ||||| || | ||||| || || Sbjct 595 AGTTGCTTACCGGCAAAAATCAAGCGT-TGCTGATCTGGAGGAATTCCTTCCTTATCTTG 653 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 |||||||||||| || | | | |||||| || ||| ||| | ||| |||||||| Sbjct 654 AATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTT 713 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 || || | || || |||||||| |||||| Sbjct 714 ACCTGTAAGAGTCTTTACAAAAATCTGCATT 744 >seq253 Length=26518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 20000 ACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTCC 20059 ||||| || || |||||||| ||||| ||||| || ||| | || ||||||| Sbjct 7820 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAGAGGGTACGGCCATCTTCC 7761 Query 20060 AATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGCA 20119 ||||| || || || ||||||| || || ||||| || | ||||| || || Sbjct 7760 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 7701 Query 20120 ATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTTG 20179 || |||||||| || | | | || ||| | ||| || | |||||| ||||| Sbjct 7700 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 7641 Query 20180 CCGGTCAACGTTTTGACAAAAATTTGCAT 20208 ||||| || ||||||||||| || ||||| Sbjct 7640 CCGGTTAAGGTTTTGACAAAGATCTGCAT 7612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419555817106497