Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq2855 201 1e-46 >seq2855 Length=12074 Score = 201 bits (222), Expect = 1e-46 Identities = 568/862 (66%), Gaps = 23/862 (3%) Strand=Plus/Plus Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 |||||| || ||||| || | |||||||| ||||| || || |||| | || || | Sbjct 4920 TTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCAT 4979 Query 12919 TTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTTTTACACCCTAATTCTAGTAA 12978 ||||| |||||||| || || | ||| | ||| | || | | | Sbjct 4980 ATCCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTGGAGAAGCCAAGAGACAAAAG 5039 Query 12979 CAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAA 13038 ||| | |||||||||||| || |||||||| ||||| | | ||||||||||| | Sbjct 5040 CAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAAG 5099 Query 13039 TTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTAT 13098 ||||| | | || ||||| || | || |||||| ||| || || ||| || Sbjct 5100 AGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAAT 5159 Query 13099 GTCTCTTATTACGTTCTCTAATGGAGGATT--TGAT-AGATGCTTAAACATCATACATGC 13155 | || ||| |||| ||| | ||| || ||| || | || |||| | || | Sbjct 5160 GGCTAATAT--CGTT-TCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGGCAGCC 5216 Query 13156 AAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGG 13215 ||||| ||| | ||||||||||||| || || |||||||| || || ||||| || Sbjct 5217 GAAATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGG 5276 Query 13216 CATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCC 13275 |||||| || || ||||| | ||| || || || || || || || || ||||| || Sbjct 5277 CATAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCC 5336 Query 13276 TTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTACTATTTTTAC--TC-TCTAT 13332 ||| || | ||| || ||| ||||||||| | || ||| || || || || Sbjct 5337 TTCTACGACACAAAAAGCAGCCAATCTTTCACCAAAG---CTTTTTCTAGAGTCATCAAT 5393 Query 13333 CCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTTCTATTGCGTTAAA 13392 ||| | ||||||||| || |||| || | |||| || |||| || || || | Sbjct 5394 CCATTCAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGAG 5453 Query 13393 TAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTATCAATAAGC-TA---TACA 13448 ||| | | | |||| | | ||| || |||| | ||||||||| || |||| Sbjct 5454 TAAGAAGTCTCTTTCAACATTATCTTTGAT----GTATGTGTCAATAAGCATAGAGTACA 5509 Query 13449 TTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTAGCCTCTGATA 13508 |||| || |||||||| ||| |||||||||||| |||||||| | || |||| | Sbjct 5510 TTTCGCTGTGGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGA 5569 Query 13509 CCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCGTCACTAGCAG 13568 || ||||||| ||| | | | | ||||||||| || || || |||||||||| Sbjct 5570 TTTGGACTTCGGTACCAAAGTTAGCGACAAGGTTTTCGTTGACGATACCATCACTAGCAG 5629 Query 13569 CaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGACAAC---TTTAACC 13625 | || || || || |||| || || || | ||||||| || | | | ||| || Sbjct 5630 CGAAGAAGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCCC 5689 Query 13626 AATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGAAGCAACAGCCT 13685 | | | || || | || | ||| || || ||||| ||||| ||| || |||| | Sbjct 5690 AGTGTTGAGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCTT 5749 Query 13686 TCTTATACATCATCCATATATC 13707 | || ||||| |||||| || Sbjct 5750 TTTTGTACATTTGCCATATTTC 5771 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430950164806074