Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq2855 214 4e-50 seq5784 150 4e-31 seq2842 150 4e-31 seq4232 125 2e-23 seq2055 87.8 4e-12 >seq2855 Length=12074 Score = 214 bits (236), Expect = 4e-50 Identities = 610/920 (66%), Gaps = 37/920 (4%) Strand=Plus/Minus Query 268691 AACCCAGATAGATTTGTGATATTTCCAATACAGCATGGT--GATATATGGAGGATGTACA 268748 || ||| |||| |||||| | || |||||| | |||| || |||||| ||||||| Sbjct 5810 AATCCAAATAGGTTTGTGCTCTTCCCAATAAA--ATGGCACGAAATATGGCAAATGTACA 5753 Query 268749 AACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC--TTAAT 268806 || | || | || ||| |||||||| |||||||| ||||||||| ||||| | || Sbjct 5752 AAAAAGCTGAAGCCAGTTTCTGGACTGTTGAAGAAGTCGATCTGTCTCATGACACTCAAC 5693 Query 268807 AGATTGGAAAAATTTAAAACC-AGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTTT 268864 | | |||||| ||| | || ||||| || || | || || || || Sbjct 5692 AC-TGGGAAAACAAGCTAACTGATAACGAAAGGTATTTCATCAAAAACATCCTCGCCTTC 5634 Query 268865 TTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTA 268924 || || | ||||||||||||||| |||||||| || || | || || || || || Sbjct 5633 TTCGCTGCTAGTGATGGTATCGTCAACGAAAACCTTGTCGCTAACTTTGGTACCGAAGTC 5574 Query 268925 CAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCA 268984 || || || |||||| | ||||||||||| ||||| ||| || |||||||| || Sbjct 5573 CAAATCCCAGAAGCCCGCTGTTTTTACGGTTTCCAAATAATGATTGAAAATATCCACAGC 5514 Query 268985 GAGATGTACAGTCTAT--TAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGAC 269042 || |||||| ||||| | || || || || || | ||||| |||| |||| Sbjct 5513 GAAATGTAC--TCTATGCTTATTGACACATACATCAAAGATAATGTTGAAAG----AGAC 5460 Query 269043 TATTTTCTTCTATG------AGAACTATGGACTGTGTGAGaaaaaaaTCTGAATGGGCTC 269096 | || || | ||| | ||| || ||| | | ||||| || | ||||| | Sbjct 5459 TTCTTACT-CAATGCCGTACAAAAC-ATCCCCTGCATAAAGAAAAAGGCTAACTGGGCCC 5402 Query 269097 TGAAATGGATAAACGA---TAGCGC--GCCTTACGGAGAAAGGTTAGTTGCTTTTGCCGC 269151 | ||||||| | || ||| || || || ||||| || | ||||||| | Sbjct 5401 TTGAATGGATTGATGACTCTAGAAAAAGCTTT--GGTGAAAGATTGGCTGCTTTTTGTGT 5344 Query 269152 TGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGG 269211 |||||||| |||||||| || || || ||||| ||||| ||| | || || | || Sbjct 5343 CGTAGAAGGCATATTCTTCAGTGGCTCCTTCGCCGCCATCTTCTGGCTCAAAAAGCGTGG 5284 Query 269212 CCTTATGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTG 269271 ||||||||| || | |||||||| |||||| | || | || || |||||| | ||| Sbjct 5283 CCTTATGCCCGGTCTTACTTTCTCAAACGAACTTATCTGTAGAGATGAAGGTCTTCACAC 5224 Query 269272 CGACTTCGCTTGTTTATTATTTACTAATTATCT-TTCACACAAACCTTCTCAAGATAGAG 269330 ||| |||| || |||| || || || || ||| ||||||||||| |||| | Sbjct 5223 CGATTTCGGCTGCCTATTGTT---CAAATACCTCGTCA-ACAAACCTTCTGAAGAAACGA 5168 Query 269331 TATACGAAATTATAGATTCAGCTGTTTCTGTAGAAACAGAATTTCTAACGGAAGCTCTAT 269390 ||| | ||| | | | || ||| | ||||| |||||| |||| || | || Sbjct 5167 TATTAGCCATTGTTGCTGACGCCGTTACCATAGAACAAGAATTCTTAACTGACTCATTAC 5108 Query 269391 CTATCGATCTTATCGGTATGAATAGCAAATCGATGATAGAATATATTAAGTTCGTATCTG 269450 || || |||||| || ||||||||||| ||| | || ||| | || || ||| Sbjct 5107 CTGTCTCTCTTATAGGAATGAATAGCAAGCTAATGTCCCAGTACATTGAATTTGTTGCTG 5048 Query 269451 ATAGATTGCTGGTGTCTTTAGGGTTTAGTAAAAAATATAACGTTGAAAATCCGTTTAGTT 269510 | | ||||| ||||| | || || ||| | ||| |||| || || || || Sbjct 5047 ACCGCTTGCTTTTGTCTCTTGGCTTCTCCAAACATTATCACGTCACCAACCCATTCGATT 4988 Query 269511 TTATGGAGAATATATCATTAGAAGGTAAGGCTAATTTCTTCGAGAAGCGGGTAAGTAACT 269570 | ||||| | || || | |||| ||| |||| ||||| || ||||| || || ||| Sbjct 4987 TCATGGATATGATCTCTATGCAAGGCAAGACTAACTTCTTTGAAAAGCGCGTCAGCGACT 4928 Query 269571 ATCAGAAAATGGGTGTAATG 269590 | || ||| ||||| ||| Sbjct 4927 ACCAAAAAGCTGGTGTCATG 4908 >seq5784 Length=6787 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || ||||| |||| || | || ||||||||||| || || Sbjct 546 GTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCTAGTTGCTTACCG 605 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | || ||||| ||||| |||||||| ||||| ||||| ||| ||| Sbjct 606 GCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTTTGTTTA 665 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | | ||| || |||||| || || || || || ||||| ||||| || Sbjct 666 ACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTACCTGTAAGAGTC 725 Query 104543 TTTACAAATATCTGCATT 104560 |||||||| ||||||||| Sbjct 726 TTTACAAAAATCTGCATT 743 >seq2842 Length=19016 Score = 150 bits (166), Expect = 4e-31 Identities = 152/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 ||||||||||| ||||| || ||||| |||| || | || ||||||||||| || || Sbjct 547 GTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCTAGTTGCTTACCG 606 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 |||||||| | | || ||||| ||||| |||||||| ||||| ||||| ||| ||| Sbjct 607 GCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTTTGTTTA 666 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | | ||| || |||||| || || || || || ||||| ||||| || Sbjct 667 ACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTACCTGTAAGAGTC 726 Query 104543 TTTACAAATATCTGCATT 104560 |||||||| ||||||||| Sbjct 727 TTTACAAAAATCTGCATT 744 >seq4232 Length=1601 Score = 125 bits (138), Expect = 2e-23 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 104333 CCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGAT 104392 || ||||| || | ||| || | ||| | ||||||||||| || || || || ||||| Sbjct 737 CCACCTCTAAGACGAAGCACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGAC 678 Query 104393 AGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGT 104452 | ||| | |||||||| |||||||| || ||||| || || | || || || || || Sbjct 677 AAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGG 618 Query 104453 ATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTAC 104511 |||||||| || || |||||||| ||| || || || || | || ||| || ||| || Sbjct 617 ATTCCTTCCTTGTCTTGAATCTTCTGC-TTGACGTTGTCAATAGTGTCGGAAGATTCGAC 559 Query 104512 CTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || ||||| ||||| || || || || || || || || ||||| Sbjct 558 TTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 511 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||| || | || | ||||||||||| || || || ||||| Sbjct 284 ATACCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCG 225 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | |||||||| |||||||| || ||||| || || | || || || || Sbjct 224 GACAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGT 165 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || |||||||| || || |||||||| ||| || || || || | || ||| || ||| Sbjct 164 GGGATTCCTTCCTTGTCTTGAATCTTCTGC-TTGACGTTGTCAATAGTGTCGGAAGATTC 106 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||| || || || || || || || || ||||| Sbjct 105 GACTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 Score = 122 bits (134), Expect = 2e-22 Identities = 167/231 (72%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| || | ||| || | || | ||||||||||| || || || ||||| Sbjct 512 ATACCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCG 453 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | ||| | |||||||| |||||||| || ||||| || || | || || || || Sbjct 452 GACAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGT 393 Query 104450 GGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTC 104508 || |||||||| || || |||||||| ||| || || || || | || ||| || ||| Sbjct 392 GGGATTCCTTCCTTGTCTTGAATCTTCTGC-TTGACGTTGTCAATAGTGTCGGAAGATTC 334 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 || || || ||||| ||||| || || || || || || || || ||||| Sbjct 333 GACTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 >seq2055 Length=5446 Score = 87.8 bits (96), Expect = 4e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 ||||| || || | || || || || || |||||||| || || ||||| ||| || Sbjct 1 GCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTTGCTTA 60 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | || ||| || ||| ||||| || || || ||||| || ||||| ||| Sbjct 61 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTT 120 Query 104543 TTTACAAATATCTGCATTTTGTG 104565 || ||||| || ||||||||||| Sbjct 121 TTGACAAAAATTTGCATTTTGTG 143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151307865183996