Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq5708 143 4e-30 seq257 143 4e-30 seq228 131 3e-26 >seq5708 Length=14279 Score = 143 bits (158), Expect = 4e-30 Identities = 190/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| ||| |||||||||| ||||| |||||||||||||| || Sbjct 4001 GCCAAGCGTCACAGAAAGAT-TCTAAGAGATAACATTCAAGGTATCACCAAGCCAGCCAT 3943 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | || |||||||||||||| ||||||||| | || ||| | |||||||||| | Sbjct 3942 CAGAAGACTTGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGGACTCATCTATGAAGAAAC 3883 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| || | || ||||| | | ||||||| || ||| || ||| || || Sbjct 3882 CCGTCTAGTCCTCAAACTCTTCTTGGAACACGTTATCAGAGACGCTGTCACCTACACTGA 3823 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||| ||||| || || || | ||| |||||||||| | ||| | ||||| Sbjct 3822 ACACGCCAAACGCAAGACCGTTACTTCTCTTGATGTCGTCTATGCCCTCAAAAGACAAGG 3763 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 3762 CCGCACCTTGTACGGTTTCGG 3742 >seq257 Length=58215 Score = 143 bits (158), Expect = 4e-30 Identities = 190/261 (73%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| ||| |||||||||| ||||| |||||||||||||| || Sbjct 35874 GCCAAGCGTCACAGAAAGAT-TCTAAGAGATAACATTCAAGGTATCACCAAGCCAGCCAT 35932 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | || |||||||||||||| ||||||||| | || ||| | |||||||||| | Sbjct 35933 CAGAAGACTTGCTCGTCGTGGTGGTGTCAAGCGTATTTCCGGACTCATCTATGAAGAAAC 35992 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| || | || ||||| | | ||||||| || ||| || ||| || || Sbjct 35993 CCGTCTAGTCCTCAAACTCTTCTTGGAACACGTTATCAGAGACGCTGTCACCTACACTGA 36052 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| ||||| ||||| || || || | ||| |||||||||| | ||| | ||||| Sbjct 36053 ACACGCCAAACGCAAGACCGTTACTTCTCTTGATGTCGTCTATGCCCTCAAAAGACAAGG 36112 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 ||| | | || ||||| || Sbjct 36113 CCGCACCTTGTACGGTTTCGG 36133 >seq228 Length=17494 Score = 131 bits (144), Expect = 3e-26 Identities = 194/270 (72%), Gaps = 4/270 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||| || | | ||| ||| |||||||||||||||| || ||||| ||||| || Sbjct 16264 GCTAAGCGCCACAGAAAGAT-TCTAAGAGATAACATCCAAGGTATTACCAAACCAGCCAT 16322 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | || |||||||||||||| ||||||||| ||||||| | | || ||||| | Sbjct 16323 CAGAAGACTTGCTCGTCGTGGTGGTGTCAAGCGTATCTCTGGTCTCATTTACGAAGAAAC 16382 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCT-TTCCACTATACCG 16610 || || | || | ||||| | |||||| |||||| || || || || | Sbjct 16383 ACGCTCGGTACTAAAACTTTTCCTAGAACACGTTATTAGAGATGCTGTTACA-TACACTG 16441 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 | ||||| ||||| |||||||| || ||| | ||| | || || ||| | ||| | |||| Sbjct 16442 AACACGCCAAACGCAAGACTGTTACATCCCTCGATGTTGTATACGCACTTAAAAGACAAG 16501 Query 16671 GCCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 |||| | || || ||||| || | |||| Sbjct 16502 GCCGCACCATCTACGGTTTCGGTGGATAAT 16531 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79069588897941