Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq2855 107 2e-18 >seq2855 Length=12074 Score = 107 bits (118), Expect = 2e-18 Identities = 207/301 (69%), Gaps = 7/301 (2%) Strand=Plus/Plus Query 21770 TACATTTCAGAATGTATATTTTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCT 21829 |||||||| || |||||||| ||| ||| || || ||||||||||| | || ||| Sbjct 5506 TACATTTCGCTGTGGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCT 5565 Query 21830 GAACATTGAACCTCGGAATAAAATCGTT-GAGCCAA-GTTTTCATTTACTATTCCATCAC 21887 | ||| || |||| | ||| ||| | | ||| |||||| || || || ||||||| Sbjct 5566 GGGATTTGGACTTCGGTACCAAA--GTTAGCGACAAGGTTTTCGTTGACGATACCATCAC 5623 Query 21888 TGGCGGCAAAAAATGCCAATATATTTTTTATAAAATATCGTTCGTTATCTGTTA---ATT 21944 | || || || || || | || ||||| || ||||| | ||||||||| |||| | Sbjct 5624 TAGCAGCGAAGAAGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGT 5683 Query 21945 TTTTCCAATCTAATAAATCTTTTGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAA 22004 ||| ||| | | || | || | ||| ||||||||| ||||| || || || Sbjct 5684 TTTCCCAGTGTTGAGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTT 5743 Query 22005 TAGCCTTTTTATACATAATCCAGATATCATTATATATTATTGGAAATATTACAAACCTGT 22064 ||| ||||| ||||| ||| || || | || ||||||| || | |||||||| | Sbjct 5744 CAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTAT 5803 Query 22065 T 22065 | Sbjct 5804 T 5804 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531859996559880