Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq2855 260 2e-64 seq23 138 1e-27 >seq2855 Length=12074 Score = 260 bits (288), Expect = 2e-64 Identities = 602/898 (67%), Gaps = 12/898 (1%) Strand=Plus/Plus Query 33012 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATT 33071 ||||||||| || | || || ||||| || || ||||| || |||| || || || | Sbjct 4920 TTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCAT 4979 Query 33072 TTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCA-ATTCAGAAA 33130 ||||||||||| || || ||||| || | |||| ||| || || | | || ||| Sbjct 4980 ATCCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTGGAGAAGCCAAGAGACA-AAA 5038 Query 33131 TCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 33190 ||| | || || || ||||| || || ||| | | | |||||||||||||| Sbjct 5039 GCAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAA 5098 Query 33191 GTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAA 33250 | || || | | |||| | ||||||||||| |||| || || || | | || Sbjct 5099 GAGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAA 5158 Query 33251 TAGATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGA 33310 | | | | ||||||||| ||| | | | | ||| |||| | || ||| Sbjct 5159 TGGCTAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGGCAGCCGA 5218 Query 33311 AATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCA 33370 ||||| ||| ||||| || ||||||| || |||||||| || || || || ||||||| Sbjct 5219 AATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGGCA 5278 Query 33371 TTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTT 33430 | |||||||||||||| ||||| || |||| ||||| || ||| ||||| || |||| Sbjct 5279 TAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCCTT 5338 Query 33431 CTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACT 33487 |||| || ||| ||| | ||| || ||| | | || ||||| ||||| | Sbjct 5339 CTACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTTTTTCTAGAGTCATCAATCCATT 5398 Query 33488 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGAT 33547 | ||||| | ||||| || |||| || || || ||| || |||||| | | Sbjct 5399 CAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGAGTAAGA 5458 Query 33548 AGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAAT 33607 ||| | ||||| | ||||||| | || || || || | | | |||||||| | Sbjct 5459 AGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAGTACATTTCGCTGT 5518 Query 33608 GAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTT 33667 | || |||||||| || || || ||||| ||||| | || || | || || |||| Sbjct 5519 GGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGATTTGGACTT 5578 Query 33668 CTGTACAAAATCGTT-CCGCCAA-ATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33725 | |||| ||| ||| || ||| ||||| || || || || ||||| || || || || Sbjct 5579 CGGTACCAAA--GTTAGCGACAAGGTTTTCGTTGACGATACCATCACTAGCAGCGAAGAA 5636 Query 33726 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG--TTTATTCCAATCATTG 33783 || | | | ||| || ||||| |||||| ||||| | | |||| | ||| Sbjct 5637 GGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCCCAGTGTTG 5696 Query 33784 A-TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33842 | | || | ||| | ||| |||||||| || ||||| || || || || ||||| || Sbjct 5697 AGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCTTTTTTGTA 5756 Query 33843 CATGTTCCAGATGTCATAATATTGGATTGGGAAAATAACAAATCTATTTGGATTTGGT 33900 ||| | ||| || || | ||| |||||||| | ||||| ||||||||||| ||| Sbjct 5757 CATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTATTTGGATTGGGT 5814 >seq23 Length=21893 Score = 138 bits (152), Expect = 1e-27 Identities = 567/882 (64%), Gaps = 23/882 (3%) Strand=Plus/Plus Query 62946 ATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTG 63005 || |||||||| || || | || || ||||| | |||||||| ||| || | Sbjct 4514 ATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACCG 4573 Query 63006 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 63065 |||||||| || || || || ||| |||||||||||||||| ||||| || |||| || Sbjct 4574 TTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGATA 4633 Query 63066 GCTTTCCAGACGACTCGAGCCTTTAT----TATAGATTTGTATCTCCTTTCTCTTTCGTA 63121 || | ||||| | || | || | || | || | | | ||||||| Sbjct 4634 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGT-TTTCGTA 4692 Query 63122 ---TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGACATTC 63178 ||| ||| | || | |||||| || |||||||| | | | |||||| ||| Sbjct 4693 CTTTAG-GTAGAGC-TCAT-CGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGCTTC 4749 Query 63179 ATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGG 63238 || || || | || ||||| || |||| ||| || || ||| || || ||||| Sbjct 4750 ATGAGGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGG 4809 Query 63239 AATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTT 63297 ||||||||| | || || || || | || | || ||| || || || ||| ||| Sbjct 4810 AATCCAAAGGCCGTAGAACAAG-TCACGGGCGCGATTTTCTTCTTTACCGTGATTTTTTC 4868 Query 63298 TAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTC 63357 | | | | || | | ||| ||||||||||| ||||| | || ||||| | | | Sbjct 4869 TCAAGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGAAGGCGC 4928 Query 63358 CAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACA 63417 | || |||||||| || || ||||| | ||||| |||||| | || | ||| | || Sbjct 4929 CTGGACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTGGAGCA 4988 Query 63418 TTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCACTGGCACGAA 63477 |||||| || ||||| || |||| || || || | || ||| ||| | || || | Sbjct 4989 TTGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTTGCGCGGA 5048 Query 63478 TATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTA 63537 |||| || || || ||||| || || ||| || ||| || || | | Sbjct 5049 TATTGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACACTGGGAGA 5108 Query 63538 ACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACA 63597 || ||||| ||||| || || ||||| ||| | || | |||||| || Sbjct 5109 TAGTATCATAAATACCTTCGATAGAGTCATCTTGCATTGTTAGCAAGAAACAG---GAGC 5165 Query 63598 TTTGGTGA---CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATT 63654 || | ||| ||| ||||||| | || || | ||||||||| || || ||||| | Sbjct 5166 TTAGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGTAAAAAAGC 5225 Query 63655 TTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC-- 63712 || || | || | ||| || | || || || | | ||| ||| || || Sbjct 5226 GTTGGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCACCATGGATACCAA 5285 Query 63713 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63772 |||| ||| ||||| | | || ||||||||||||| ||| || | | ||| | Sbjct 5286 TACT--GACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAACTTTGAG 5343 Query 63773 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63814 | ||| ||| |||| | ||||| |||||||| ||||| || Sbjct 5344 AAGGTAAGATCTTTCGAGGGTTTTGAAACCAAAGTAGTTATA 5385 Score = 87.8 bits (96), Expect = 2e-12 Identities = 333/520 (64%), Gaps = 11/520 (2%) Strand=Plus/Plus Query 61976 TATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATA 62035 || ||||| | ||| | ||||||| || | | ||| || || || || | || || Sbjct 3409 TACTTTATTATGGTCGATAGTGAATTTGATAGCATCGGCAGCAGGCTTGGTTCTGAGGTA 3468 Query 62036 GTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA 62095 |||||| || || || | || |||| || ||||| ||||| || ||||| Sbjct 3469 GTACATGCCTGTCTTCAATCCTTTCTTCCAGCCATAAAAGTGCATCGAAGTGAGTTTTTG 3528 Query 62096 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 62155 ||| | || | | || || ||||| | ||||| |||||||||||| | ||||| | Sbjct 3529 GTAATTTGGGTTGTCCATGTGAATATTGAGGGATTGGCTTTGATCGATGTAAGCTCCGCG 3588 Query 62156 GTCTGCAGCCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCG 62215 |||||||| | | |||||| | |||||| |||||| ||| |||||| || | | | Sbjct 3589 GTCTGCAGAAAGATCTATGATAGACTTTTGCTTAATTTCATAAACAGTTTTGTAGAGTTG 3648 Query 62216 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATGGATCCACCATCTGCCATAATCCT 62272 || | || ||||| | | | | | | || || |||||| | || || || Sbjct 3649 TTTCAAGTCATCTGGGATTTGGGGAAGTGCTTGGATAGATCCATTGTGAGCGATTAT--- 3705 Query 62273 ATTCTTGA----TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62328 || |||| | |||||| ||| || | | |||| | | | | | Sbjct 3706 -TTGTTGACGGGTGTCATCAGACCACAAACCGCGTTTTACTAAATCACGCAATAACCAAG 3764 Query 62329 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62388 | |||||||| || |||||||||| | || | ||||||||||| || ||| |||| Sbjct 3765 GGTTAACTACCTGGAATTCTCCAGCAAGAACGCGACGAGTGTAAATGTTTGAGGTGTACG 3824 Query 62389 GTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62448 | || | | || || ||||||||||| | || || || || ||||| || || | Sbjct 3825 GCTCAAAGCATTCGTTGAAGCCCAAAATTTGGGATGTGGAGGCTGTAGGCATGGGAGCGA 3884 Query 62449 CCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62488 || | ||||| | |||||| || |||| || || Sbjct 3885 GCAGGAGGGAGTTTCTGACGCCGTATTTTTTGATGTTTTC 3924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622899412162920