Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq23 158 3e-33 >seq23 Length=21893 Score = 158 bits (174), Expect = 3e-33 Identities = 558/860 (65%), Gaps = 15/860 (2%) Strand=Plus/Minus Query 363469 ATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGATGCCGCGATTGAAACATATAAG 363528 ||||| || ||||||||||||| | ||||| | |||| || |||| || | Sbjct 5298 ATGCGCGTCAGTATTGGTATCCATGGTGAAGATGTCCAATCCGCCATCAAAACTTACCAC 5239 Query 363529 CTTCTAAGTGC--TCGTGTATTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTC 363586 || | || | || | || || || ||| | || || | | ||| |||||||| Sbjct 5238 CT--CATGTCCCAACGCTTTTTTACTCATGCCTCTCCTACCCTTTTCAACTCTGGAACTA 5181 Query 363587 GTAATCCACAGATGTCTTCTTGCTTTCTT-CTAAAAATGAAGGACGATTCCATCGAGGGT 363645 | || ||| | || || |||||| |||| |||| | || || || ||||| ||| Sbjct 5180 ATCGCCCTCAGCTAAGCTCCTG-TTTCTTGCTAACAATGCAAGATGACTCTATCGAAGGT 5122 Query 363646 ATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTA 363705 || | ||| || | | |||||| |||||||| ||| || ||||| || | Sbjct 5121 ATTTATGATACTATCTCCCAGTGTGCTAAAATTTCCAAATCTGCTGGTGGAATCGGCCTC 5062 Query 363706 TCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAAT 363765 ||||||||| | || ||| | |||||| || || || ||| || Sbjct 5061 AGCATCCACAATATCCGCGCAACTGGCTCCTACATTGCTGGAACTAACGGTACCTCCAAC 5002 Query 363766 GGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGA 363825 || | ||||| ||||| | || || ||| || || | |||||||| || || || Sbjct 5001 GGAATCGTTCCAATGCTCCAAGTATTCAACACAACCGCTCGATACGTCGATCAAGGCGGC 4942 Query 363826 GGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAG 363885 || || ||| || || || || ||||| || || ||| | || |||||||| Sbjct 4941 AACAAACGTCCAGGCGCCTTCGCCATTTATCTTGAACCATGGCATTCTGACATTTTTGAA 4882 Query 363886 TTTCTTGAGCTCCGGAAAAA--CACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCT 363943 ||| || | || |||||| ||| || ||||| ||| || || ||||| |||||| Sbjct 4881 TTT-TTAAACTTGAGAAAAAATCAC-GGTAAAGAAGAAAATCGCGCCCGTGACTTGTTCT 4824 Query 363944 ATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCAC 364003 | | |||||| || |||||| ||| ||| ||||| || | | |||||| Sbjct 4823 ACGGCCTTTGGATTCCTGACCTTTTCATGCGCCGCGTTTTGGAAAACGGCGACTGGTCAT 4764 Query 364004 TCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTC 364063 | || ||||| || ||| ||| ||||| | || || |||||||| | | | || | Sbjct 4763 TATTCTGCCCTCATGAAGCTCCTGGTCTAGCTGACGTTTGGGGTGAAAAGTTCGATGAGC 4704 Query 364064 TATACGAAAAGTATGAA---TCGGAGGGAAAGGCTCGTAAGACAATTCCCGCACAGAAGC 364120 | ||| |||||| ||| | || || |||| || || | || ||| | | Sbjct 4703 TCTACCTAAAGTACGAAAACACTGAAGGTCTTCCTCGCAAACGCATCACTGCCCAGCAAC 4644 Query 364121 TATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAG 364180 | |||| || ||| | ||||| ||||| || || || || || || ||| | ||||||| Sbjct 4643 TCTGGTACGCTATCTTAGATTCCCAGATCGAAACTGGTACTCCATACATGCTCTACAAAG 4584 Query 364181 ATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGC-AACCTA 364239 | |||| ||| | || || ||||| || |||| || |||||| | || | |||||| Sbjct 4583 ACGCGTGTAACGGTAAATCTAACCAACAAAACCTCGGAACAATT-AAAAGCTCAAACCTA 4525 Query 364240 TGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCG 364299 || || || || |||| |||||| | ||||| ||| ||||| ||||| || || Sbjct 4524 TGCACTGAAATCGTTGAGTACACCTCCAAGGACGAAGTTGCTGTATGCAACCTAGCCTCC 4465 Query 364300 ATCGCGCTTCCGGCGTTTGT 364319 || || || || | ||||| Sbjct 4464 ATTGCCCTCCCTTCTTTTGT 4445 Score = 100 bits (110), Expect = 7e-16 Identities = 285/436 (65%), Gaps = 4/436 (1%) Strand=Plus/Minus Query 364432 TCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATG 364491 || || ||||| | ||||| || |||||||| || || ||| | ||||||| ||| || Sbjct 4200 TCAAACATGCGCAACCGCCCAATCGGTCTTGGCGTCCAAGGCTTAGCTGACGCTTTCTTG 4141 Query 364492 ATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTTTGAA 364551 ||||| | | || || || | || || ||| || ||| ||||| ||| Sbjct 4140 ATGCTTCGCCTACCTTTCGAATCTGAAGGTGCCCGCACTCTCAACAAGCTCATCTTCGAA 4081 Query 364552 ACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGAAAGTAC 364611 ||||| ||| || || | ||||| || || | || || | | || | || Sbjct 4080 ACAATTTATCACGCTGCTCTTGAAGCTTCATGCGAAATTGCTAAGGCTGATGGCCACTAT 4021 Query 364612 TCTACTTATGAGGG--GTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGAATG 364669 | || || || || |||| || || |||| ||||| || |||||| | ||||||| Sbjct 4020 CCAACCTACGAAGGTAGTCCAGTCAGTC--AGGGTAAATTGCAATTTGATATGTGGAATG 3963 Query 364670 TCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATGGTA 364729 |||| || || | | ||| ||||||| || || ||| ||| | || || | || Sbjct 3962 TCACTCCTTCCGACTTGTGGGACTGGGACACACTCCGTGAAAACATCAAAAAATACGGCG 3903 Query 364730 CTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCGGAA 364789 | ||||||||| | || |||||||| || || || || | || || | || Sbjct 3902 TCAGAAACTCCCTCCTGCTCGCTCCCATGCCTACAGCCTCCACATCCCAAATTTTGGGCT 3843 Query 364790 ACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCGGAG 364849 |||||| ||||| || |||| || || |||| | || || |||||| | |||| Sbjct 3842 TCAACGAATGCTTTGAGCCGTACACCTCAAACATTTACACTCGTCGCGTTCTTGCTGGAG 3783 Query 364850 AATTTCCGGTAGTTAA 364865 |||| | ||||||||| Sbjct 3782 AATTCCAGGTAGTTAA 3767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303251116899134