Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq253 147 2e-30 seq5784 113 4e-20 seq2842 113 4e-20 seq23 109 5e-19 seq4232 100 2e-16 >seq253 Length=26518 Score = 147 bits (162), Expect = 2e-30 Identities = 162/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| ||||| || ||| | |||||| |||| ||||| || | Sbjct 7612 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 7671 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||| ||||||| | |||||||||||||| || || ||||| || ||||| ||||| Sbjct 7672 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 7731 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || ||||| |||| || || |||||| | ||||||| | | | | || ||| |||||| Sbjct 7732 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGCCGTACCCTCTCCGACTATAAC 7791 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGA 24206 || ||||| |||||||| | || || || ||||| Sbjct 7792 ATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGA 7827 >seq5784 Length=6787 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | |||||||| || | || || ||| | || ||| ||||||| || | Sbjct 743 AATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTC 684 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || | |||||| | || |||||||| ||| || || ||||| || ||||| ||||| Sbjct 683 TGATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 624 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | |||||| | ||| |||||||| ||||||| | | | | | ||| || || Sbjct 623 GCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAA 564 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||||||| |||| || || Sbjct 563 CATTCAAAAAGAATCTACTCTTCACTTGGT 534 >seq2842 Length=19016 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 |||||| | |||||||| || | || || ||| | || ||| ||||||| || | Sbjct 744 AATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTC 685 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 || | |||||| | || |||||||| ||| || || ||||| || ||||| ||||| Sbjct 684 TGATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCA 625 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAA 24169 || | |||||| | ||| |||||||| ||||||| | | | | | ||| || || Sbjct 624 GCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAA 565 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGT 24199 |||||||||||||||||| |||| || || Sbjct 564 CATTCAAAAAGAATCTACTCTTCACTTGGT 535 >seq23 Length=21893 Score = 109 bits (120), Expect = 5e-19 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 131867 GTGAATTGAATTGTATTCGCAGCAGGCTTAGTTCTTAAATAATACATGCCCGTCTTCAAG 131926 ||||||| || | || ||||||||||| ||||| | || |||||||| |||||||| Sbjct 3428 GTGAATTTGATAGCATCGGCAGCAGGCTTGGTTCTGAGGTAGTACATGCCTGTCTTCAAT 3487 Query 131927 CCTTTCTCCCAAGAATAATTGTGTATGGACGATAAAATTTTGTAGCTGGGATTGGCCACA 131986 ||||||| ||| |||| ||| || || | | ||| ||| | || ||| ||| Sbjct 3488 CCTTTCTTCCAGCCATAAAAGTGCATCGAAGTGAGTTTTTGGTAATTTGGGTTGTCCATG 3547 Query 131987 AACAGATTGAGCGATTGACTCTGATCGATGTAAGGTCCCCTGTCTGCGGCCATATTCAAC 132046 | |||||| ||||| || ||||||||||||| ||| | |||||| | | || | Sbjct 3548 TGAATATTGAGGGATTGGCTTTGATCGATGTAAGCTCCGCGGTCTGCAGAAAGATCTATG 3607 Query 132047 A-ATACTTTCTGCTTAATTTCCCAAGCGGTCTTGAAGAG 132084 | | ||||| ||||||||||| || | || ||| |||| Sbjct 3608 ATAGACTTT-TGCTTAATTTCATAAACAGTTTTGTAGAG 3645 >seq4232 Length=1601 Score = 100 bits (110), Expect = 2e-16 Identities = 162/233 (70%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || |||| || || | |||||| | |||||||| | | Sbjct 511 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 570 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| || |||||| ||||| ||||| || || || || || Sbjct 571 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 630 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | |||||| ||||| ||||| | | | | | ||||| ||| Sbjct 631 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAAC 690 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGACTATA 24223 || |||||||||||||| ||||||| ||| | | | ||||| || | ||| Sbjct 691 ATCCAAAAAGAATCTACTCTTCATTTGGTGCTTCGTCTTAGAGGTGGTCAATA 743 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || |||| || || | |||||| | |||||||| | | Sbjct 283 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 342 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| || |||||| ||||| ||||| || || || || || Sbjct 343 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 402 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | |||||| ||||| ||||| | | | | | ||| || ||| Sbjct 403 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAC 462 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || |||||||||||||| |||| || ||| Sbjct 463 ATCCAAAAAGAATCTACTCTTCACTTGGTG 492 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || |||| || || | |||||| | |||||||| | | Sbjct 55 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 114 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||| || || | ||||| || |||||| ||||| ||||| || || || || || Sbjct 115 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAG 174 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | || || | | |||||| ||||| ||||| | | | | | ||| || || Sbjct 175 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAA 234 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || |||||||||||||| |||| || ||| Sbjct 235 ATCCAAAAAGAATCTACTCTTCACTTGGTG 264 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429903843071235