Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq2855 253 3e-62 seq23 152 7e-32 >seq2855 Length=12074 Score = 253 bits (280), Expect = 3e-62 Identities = 597/894 (67%), Gaps = 12/894 (1%) Strand=Plus/Plus Query 32369 TTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATT 32428 ||||||||| || | || || ||||| || || ||||| || |||| | || || | Sbjct 4920 TTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTTGCATAGAGATCAT 4979 Query 32429 TTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCA-ATTCAGAAA 32487 ||||||||||||||||| ||||| || | |||| ||| || || | | || ||| Sbjct 4980 ATCCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTGGAGAAGCCAAGAGACA-AAA 5038 Query 32488 TCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAA 32547 ||| | || || |||||||| || || ||| | | | |||||||||||||| Sbjct 5039 GCAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTATTCATTCCTATAA 5098 Query 32548 GTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAA 32607 | || || | | |||| | ||||||||||| || | || ||||| | | || Sbjct 5099 GAGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACGGCGTCAGCAACAA 5158 Query 32608 TAGATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGA 32667 | | | || ||||||||| ||| | | | | ||| |||| | || ||| Sbjct 5159 TGGCTAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAACAATAGGCAGCCGA 5218 Query 32668 AATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCA 32727 ||||| ||| ||||| || ||||||| || | |||||| || || || || ||||||| Sbjct 5219 AATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAAGTAAGACCGGGCA 5278 Query 32728 TTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTT 32787 | |||||||||||||| ||||| || |||| || || || ||| ||||| || |||| Sbjct 5279 TAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTGAAGAATATGCCTT 5338 Query 32788 CTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCT---GTCATGTATCCACT 32844 |||| | ||| ||| | ||| || ||| | | || ||||| ||||| | Sbjct 5339 CTACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTTTTTCTAGAGTCATCAATCCATT 5398 Query 32845 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 32904 | ||||| | ||||| || |||| || || || | | || ||||| | | Sbjct 5399 CAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACGGCATTGAGTAAGA 5458 Query 32905 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 32964 ||| | ||||| | ||||||| | ||||| ||||| | | | |||||||| | Sbjct 5459 AGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAGTACATTTCGCTGT 5518 Query 32965 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTT 33024 | || |||||||| ||||| || ||||| || || | || || | || || |||| Sbjct 5519 GGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCTGGGATTTGGACTT 5578 Query 33025 CTGTACAAAATCGTT--CTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAA 33082 | |||| ||| ||| | | | ||||| || || || || ||||| || || || || Sbjct 5579 CGGTACCAAA--GTTAGCGACAAGGTTTTCGTTGACGATACCATCACTAGCAGCGAAGAA 5636 Query 33083 CGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAG--TTTATTCCAATCATTG 33140 || | | | ||| || ||||| |||||| ||||| | | |||| | ||| Sbjct 5637 GGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTTTCCCAGTGTTG 5696 Query 33141 A-TATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATA 33199 | | || | ||| | ||| |||||||| || ||||| || || || || ||||| || Sbjct 5697 AGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCAGCTTTTTTGTA 5756 Query 33200 CATATTCCAGATGTCATGATATTGAATTGGAAAAATAACAAATCTATTTGGATT 33253 ||| | ||| || || || ||| ||||| || | ||||| ||||||||||| Sbjct 5757 CATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTATTTGGATT 5810 >seq23 Length=21893 Score = 152 bits (168), Expect = 7e-32 Identities = 570/881 (65%), Gaps = 21/881 (2%) Strand=Plus/Plus Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 || |||||||| || || | || || ||||| | |||||||| ||| || | Sbjct 4514 ATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACCG 4573 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 |||||||| || || || || ||| |||||||||||||||| ||||| || |||| || Sbjct 4574 TTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGATA 4633 Query 62921 GCTTTCCAGACGACTCGAGCCTTTATTA--TAGATTTGTATCTCTTTTCTCTTT-CGTA- 62976 || | ||||| | || | || | | | | ||| | ||| |||| Sbjct 4634 GCGTACCAGAGTTGCTGGGCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTTTTCGTAC 4693 Query 62977 --TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCA 63034 ||| ||| | || | |||||| || |||||||| | | || |||||| |||| Sbjct 4694 TTTAG-GTAGAGC-TCAT-CGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGCTTCA 4750 Query 63035 TCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGA 63094 | || || | || ||||| || |||| ||| || || ||| || || |||||| Sbjct 4751 TGAGGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGA 4810 Query 63095 ATCCAAAGAGC-TATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTT 63153 |||||||| | || || || || | || | || ||| || || || ||| ||| | Sbjct 4811 ATCCAAAGGCCGTAGAACAAG-TCACGGGCGCGATTTTCTTCTTTACCGTGATTTTTTCT 4869 Query 63154 AAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCC 63213 | | | || | | ||| ||||||||||| ||||| | || ||||| | | || Sbjct 4870 CAAGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGAAGGCGCC 4929 Query 63214 AGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACAT 63273 || |||||||| || || ||||| | ||||| |||||| | || | ||| | ||| Sbjct 4930 TGGACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTGGAGCAT 4989 Query 63274 TGGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT 63333 ||||| || || ||||| ||||| || || || | || ||| ||| | || || || Sbjct 4990 TGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTTGCGCGGAT 5049 Query 63334 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAA 63393 ||| || || || ||||| || || ||| || ||| || || | | Sbjct 5050 ATTGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACACTGGGAGAT 5109 Query 63394 CGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGACAT 63453 |||||||| || || || ||| ||||| ||| | || | |||||| || | Sbjct 5110 AGTATCATAAATACCTTCGATAGAGTCATCTTGCATTGTTAGCAAGAAACAG---GAGCT 5166 Query 63454 TTGGTGA---CGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTT 63510 | | ||| ||| ||||||| | || || | ||||||||| || |||||||| | Sbjct 5167 TAGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGTAAAAAAGCG 5226 Query 63511 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCC--T 63568 || || | || | ||| || | || || || | | ||| ||| || || | Sbjct 5227 TTGGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCACCATGGATACCAAT 5286 Query 63569 ACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAAC 63628 ||| ||| ||||| | | || ||||||||||||| ||| || | | ||| | Sbjct 5287 ACT--GACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAACTTTGAGA 5344 Query 63629 AAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTA 63669 | ||| ||| |||| | ||||| |||||||| ||||| || Sbjct 5345 AGGTAAGATCTTTCGAGGGTTTTGAAACCAAAGTAGTTATA 5385 Score = 82.4 bits (90), Expect = 1e-10 Identities = 332/520 (64%), Gaps = 11/520 (2%) Strand=Plus/Plus Query 61831 TATTTTATCCTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATA 61890 || ||||| | ||| | ||||||| || | | ||| || || || || | || || Sbjct 3409 TACTTTATTATGGTCGATAGTGAATTTGATAGCATCGGCAGCAGGCTTGGTTCTGAGGTA 3468 Query 61891 GTACATTCCCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGA 61950 |||||| || || || | || |||| || ||||| ||||| || ||||| Sbjct 3469 GTACATGCCTGTCTTCAATCCTTTCTTCCAGCCATAAAAGTGCATCGAAGTGAGTTTTTG 3528 Query 61951 ATAACTCGGATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCT 62010 ||| | || | | || || ||||| | ||||| |||||||||||| | ||||| | Sbjct 3529 GTAATTTGGGTTGTCCATGTGAATATTGAGGGATTGGCTTTGATCGATGTAAGCTCCGCG 3588 Query 62011 GTCTGCAGCCATTTTTATAATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCG 62070 |||||||| | | ||| || | |||||| |||||| ||| |||||| || | | | Sbjct 3589 GTCTGCAGAAAGATCTATGATAGACTTTTGCTTAATTTCATAAACAGTTTTGTAGAGTTG 3648 Query 62071 CTTAATATCTTCTGGAAGGTTTGTA--TTC-TGAATGGATCCACCATCTGCCATAATCCT 62127 || | || ||||| | | | | | | || || |||||| | || || || Sbjct 3649 TTTCAAGTCATCTGGGATTTGGGGAAGTGCTTGGATAGATCCATTGTGAGCGATTAT--- 3705 Query 62128 ATTCTTGA----TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCG 62183 || |||| | |||||| ||| || | | |||| | | | | | Sbjct 3706 -TTGTTGACGGGTGTCATCAGACCACAAACCGCGTTTTACTAAATCACGCAATAACCAAG 3764 Query 62184 GATTAACTACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACG 62243 | |||||||| || |||||||||| | || | ||||||||||| || ||| |||| Sbjct 3765 GGTTAACTACCTGGAATTCTCCAGCAAGAACGCGACGAGTGTAAATGTTTGAGGTGTACG 3824 Query 62244 GTTCCACAGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCA 62303 | || | | || || ||||||||||| | || || || || ||||| || || | Sbjct 3825 GCTCAAAGCATTCGTTGAAGCCCAAAATTTGGGATGTGGAGGCTGTAGGCATGGGAGCGA 3884 Query 62304 CCAATAAACTATTTCTAAGACCGTATGTTCTGATTTTATC 62343 || | ||||| | |||||| || |||| || || Sbjct 3885 GCAGGAGGGAGTTTCTGACGCCGTATTTTTTGATGTTTTC 3924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633583392505200