Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq2855 190 2e-43 >seq2855 Length=12074 Score = 190 bits (210), Expect = 2e-43 Identities = 611/934 (65%), Gaps = 17/934 (2%) Strand=Plus/Plus Query 92789 TCATAACACCACATTTTTGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTT 92848 |||| |||||| ||||||||| || | || ||||||||||| || ||||| |||| Sbjct 4907 TCATGACACCAGCTTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTT 4966 Query 92849 CCAAAGATATCGAATTCACTAGT--GATTGGATTCTTGGCGTTATAATACTTTTCACCGA 92906 || ||| ||| || || | || ||| || || ||| ||||| ||| | Sbjct 4967 GCATAGAGATCATATCCATGAAATCGAATGGGTTGGTGACGTGATAATG-TTTGGAGAAG 5025 Query 92907 TCAACTCGTACAAT-AATCTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAA 92965 ||| | || || | ||||| |||||||| |||||||| ||||| | | | | Sbjct 5026 CCAAGAGACAAAAGCAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTA 5085 Query 92966 TTCATTCCTAGAAGACGTACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACG 93025 |||||||||| |||| ||||||| | ||| || ||||| |||| || || |||| Sbjct 5086 TTCATTCCTATAAGAGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACG 5145 Query 93026 GCTTCTTTCAAGATTTCTATTACTCTACTATTTGGT-GGTTTTTGTACGACATAATTGTA 93084 || || | || ||| || || | || | ||||| | |||| || ||| | Sbjct 5146 GCGTCAGCAACAATGGCTAATA-TCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAA 5204 Query 93085 CATTAAGCACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAA 93144 || || ||| | || ||||| || | |||||| |||| | || | || || ||| Sbjct 5205 CAATAGGCAGCCGAAATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAA 5264 Query 93145 TGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGa 93204 || | ||| || | || || || || |||||||| || || | || || ||| Sbjct 5265 AGTAAGACCGGGCATAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACT 5324 Query 93205 aaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAA--TTTGCGGAA 93262 || ||||| ||||| ||| | ||| || | | | ||| |||| ||| | | Sbjct 5325 GAAGAATATGCCTTCTACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTTTTTCTAGA 5384 Query 93263 TTACTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCG 93322 | | ||||||| | ||||| | || |||||||| || || || | ||||| | Sbjct 5385 GTCATCA--ATCCATTCAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGA-TGTTTTG 5441 Query 93323 -ATAGCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAG 93381 | || || | || | | |||| || | |||| |||||||| || || | || Sbjct 5442 TACGGCATTGAGTAAGAAGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCAT 5501 Query 93382 AGAATACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGC 93441 ||| |||||||| |||| ||| || || |||||||| ||||| ||||| | || Sbjct 5502 AGAGTACATTTCGCTGTGGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGC 5561 Query 93442 TTCCGTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATC 93501 ||| | ||| || ||||| | ||| | | || || ||||| ||||| |||||||| Sbjct 5562 TTCTGGGATTTGGACTTCGGTACCAAAGTTAGCGACAAGGTTTTCGTTGACGATACCATC 5621 Query 93502 GGATGCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTT 93561 || || || || || | || | || || |||| | || | ||| | ||||| Sbjct 5622 ACTAGCAGCGAAGAAGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTT 5681 Query 93562 AT---CCCAATCG-GATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATG 93617 | |||| | || | || | || |||||||||||||| |||||||| || | Sbjct 5682 GTTTTCCCAGTGTTGAGTG-TCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGG 5740 Query 93618 CTTCTGCTTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAAC 93677 |||| |||||||||||||| | |||||| || || ||| ||||| || | ||||| | Sbjct 5741 CTTCAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACC 5800 Query 93678 GATTAGGGTTATCTTTTAGTAACGGCTCTAGTTG 93711 ||| || || ||| || | ||||| || || Sbjct 5801 TATTTGGATTGGGTTTAAGAAGAGGCTCGAGCTG 5834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556818081815880