Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5784 154 1e-32 seq2842 154 1e-32 seq4232 147 2e-30 seq253 143 2e-29 seq2055 109 5e-19 seq23 96.9 3e-15 >seq5784 Length=6787 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||| | || |||||||| | || || ||||| ||| | | Sbjct 742 ATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCT 683 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | ||||||||||||||||| ||||| || ||||| || ||||| Sbjct 682 GATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 623 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || |||||||| || || |||| ||| ||||||| | ||||| |||||| Sbjct 622 CAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAAC 563 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| || | || || ||| | || | || || ||| Sbjct 562 ATTCAAAAAGAATCTACTCTTCACTTGGTTCTCCGTCTACGTGGTGGT 515 >seq2842 Length=19016 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || ||| | || |||||||| | || || ||||| ||| | | Sbjct 743 ATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCT 684 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||| | | || || | ||||||||||||||||| ||||| || ||||| || ||||| Sbjct 683 GATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 624 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||| | || |||||||| || || |||| ||| ||||||| | ||||| |||||| Sbjct 623 CAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAAC 564 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||||||||| || | || || ||| | || | || || ||| Sbjct 563 ATTCAAAAAGAATCTACTCTTCACTTGGTTCTCCGTCTACGTGGTGGT 516 >seq4232 Length=1601 Score = 147 bits (162), Expect = 2e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| ||| |||| || || || | || |||||||| ||| | || Sbjct 511 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 570 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || |||||||||||||| || || ||||| || || Sbjct 571 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 630 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||||||||| | || || ||| || | || ||||||||| Sbjct 631 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAAC 690 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||||||||| || | ||||| || Sbjct 691 ATCCAAAAAGAATCTACTCTTCATTTGGT 719 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| ||| |||| || || || | || |||||||| ||| | || Sbjct 283 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 342 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || |||||||||||||| || || ||||| || || Sbjct 343 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 402 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||||||||| | || || ||| || | ||||| |||||| Sbjct 403 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAC 462 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||||||||| || Sbjct 463 ATCCAAAAAGAATCTAC 479 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || ||||| ||| |||| || || || | || |||||||| ||| | || Sbjct 55 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 114 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | ||| | |||| || || |||||||||||||| || || ||||| || || Sbjct 115 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAG 174 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || |||||||||||||| | || || ||| || | ||||| ||||| Sbjct 175 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAA 234 Query 22399 ATTCAAAAAGAATCCAC 22415 || ||||||||||| || Sbjct 235 ATCCAAAAAGAATCTAC 251 >seq253 Length=26518 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| ||||| |||||||||||||| | || || || || ||| || || Sbjct 7612 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 7671 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | |||||||||| || ||||| ||||| || ||||| || ||||| Sbjct 7672 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 7731 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||| | ||||| || || || || || || || ||| ||| ||| ||||||| || ||| Sbjct 7732 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGCCGTACCCTCTCCGACTATAAC 7791 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 || ||||| ||||| ||| | || || || Sbjct 7792 ATCCAAAAGGAATCTACCCTCCACTTGGT 7820 >seq2055 Length=5446 Score = 109 bits (120), Expect = 5e-19 Identities = 108/140 (77%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||||||||| |||||| | || || || || |||| ||||| || ||| | Sbjct 140 AAAATGCAAATTTTTGTCAAAACTCTTACAGGCAAGACCATCACCCTTGAGGTTGAATCT 81 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| || | ||| | | || |||||||||||||||||||| || || ||||| || Sbjct 80 TCCGACACTATTGACAACGTTAAGCAAAAAATTCAAGACAAGGAAGGAATCCCACCAGAC 21 Query 22336 CAACAACGTCTTATATTTGC 22355 || |||||||| || ||||| Sbjct 20 CAGCAACGTCTCATCTTTGC 1 >seq23 Length=21893 Score = 96.9 bits (106), Expect = 3e-15 Identities = 382/587 (65%), Gaps = 18/587 (3%) Strand=Plus/Plus Query 128788 GTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCCTGTTTTCAAA 128847 || ||||| ||||| || || || |||||||| | | |||||||||||||| ||||| Sbjct 3428 GTGAATTTGATAGCATCGGCAGCAGGCTTGGTTCTGAGGTAGTACATGCCTGTCTTCAAT 3487 Query 128848 CCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGT-GGGTTGACTCaa 128906 || | ||||| | | ||| |||| || | | ||| | |||||| | || Sbjct 3488 CCTTTCTTCCAGCCATAAAAGTGCATCGAAGTGAGTTTTTGGTAATTTGGGTTGTC-CAT 3546 Query 128907 aaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGCCATACCAAT 128966 |||||| | ||||| |||||||| || | | ||||| || |||| | | | || Sbjct 3547 GTGAATATTGAGGGATTGGCTTTGATCGATGTAAGCTCCGCGGTCTGCAGAAAGATCTAT 3606 Query 128967 CAAA---TTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTGTTTTGG 129023 | | |||| | || ||||| | || |||||||| || | | ||| || | ||| Sbjct 3607 GATAGACTTTTGC---TTAATTTCATAAACAGTTTTGTAGAGTTGTTTCAAGTCATCTGG 3663 Query 129024 TATTTCTTCAATGTTCT-GCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCATCTGTT 129082 |||| || || || | | || |||| || || |||| | || | | | Sbjct 3664 GATTTGGGGAA-GTGCTTGGATAGATCCATTGTGAGCGATTATTTGTTGACGGGTGTCAT 3722 Query 129083 CGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTGAAAGT 129142 | ||||| |||| | ||||| || | ||| | ||| || || | Sbjct 3723 CAGACCACAAACCGCGTTTTACTAAATCACGCAATAACCAAGGGTTAACTACCTGGAATT 3782 Query 129143 CACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTCATTGT 129202 | || || | |||||| ||| ||||||||| |||| |||||||||| |||| ||| Sbjct 3783 CTCCAGCAAGAACGCGACGAGTGTAAATGTTTGAGGTGTACGGCTCAAAGCATTCGTTGA 3842 Query 129203 TGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAA-AGCGAGTTTCGC 129261 ||| || ||||| | || | || || |||||| ||| | ||| || ||||||| Sbjct 3843 AGCCCAAAATTTGGGATGTGGAGGCTGTAGGCATGGGAGCGA-GCAGGAGGGAGTTTCTG 3901 Query 129262 AAACCGTGCTGTTTAATGTCtttttttAATTGTGTCC-AGTCCCACA--TCGATGTGGGT 129318 | |||| | ||| |||| ||| | ||||||| ||||||||| ||| | || Sbjct 3902 ACGCCGTATTTTTTGATGT-TTTCACGGAGTGTGTCCCAGTCCCACAAGTCG--GAAGGA 3958 Query 129319 GTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACT 129365 ||| |||||||| || |||||||| ||||| |||| | ||||| Sbjct 3959 GTGACATTCCACATATCAAATTGCAATTTACCCTGACTGACTGGACT 4005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419696606575405