Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq253 172 1e-37 seq4232 156 8e-33 seq5784 145 1e-29 seq2842 145 1e-29 seq2055 102 2e-16 >seq253 Length=26518 Score = 172 bits (190), Expect = 1e-37 Identities = 170/219 (78%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || || |||||||||||||| |||||||| || | |||||||| Sbjct 7820 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAGAGGGTACGGCCATCTTCC 7761 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 || ||||| || ||||| || |||||||| || || || ||||| |||||||| ||||| Sbjct 7760 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 7701 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 |||||| |||||| ||||||| ||| | ||||| || || | ||| || ||||| Sbjct 7700 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 7641 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT--TATGCTAT 68469 || || | ||| ||||| || |||||||| ||| |||| Sbjct 7640 CCGGTTAAGGTTTTGACAAAGATCTGCATGATATACTAT 7602 >seq4232 Length=1601 Score = 156 bits (172), Expect = 8e-33 Identities = 160/209 (77%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || |||||||||||||| || ||||| | || | || ||||| Sbjct 491 ACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCTTCA 432 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || ||||| || ||||| | ||| ||||| ||||| || ||||||||||||||| Sbjct 431 AGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGA 372 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||| || || ||||| | ||||| ||||| | ||| ||||| || Sbjct 371 ATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTG 312 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| ||||| || ||||| Sbjct 311 CCTGTTAGAGTCTTAACGAAGATTTGCAT 283 Score = 152 bits (168), Expect = 9e-32 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 68253 ACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCT 68312 |||||||| || || || ||||||||||| || || ||||| | || | || ||||| Sbjct 263 ACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGTACGGCCGTCTTCA 204 Query 68313 AACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGA 68372 | || || ||||| || ||||| | ||| ||||| ||||| || ||||||||||||||| Sbjct 203 AGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGA 144 Query 68373 ATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTT 68432 ||||| ||||||| || || ||||| | ||||| ||||| | ||| ||||| || Sbjct 143 ATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTG 84 Query 68433 CCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || || || ||||| ||||| || ||||| Sbjct 83 CCTGTTAGAGTCTTAACGAAGATTTGCAT 55 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || | ||| || | ||||| || || || || |||||||||||||| ||||| || Sbjct 737 CCACCTCTAAGACGAAGCACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGAC 678 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || ||||| | || || ||||| || ||||| | ||| ||||| ||||| Sbjct 677 AAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGG 618 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||||||||| ||||||| || || ||||| | ||||| ||| Sbjct 617 ATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACT 558 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || || || || ||||| ||||| || ||||| Sbjct 557 TCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 511 >seq5784 Length=6787 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || || |||||||| ||||| || ||||| Sbjct 516 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAT 575 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||||| ||||| ||||| || || | | ||| || || || ||| Sbjct 576 AAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGA 635 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| |||||||| ||| || || |||||| | || | ||||||||| Sbjct 636 ATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACT 695 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| |||||||| || || || ||||| || || ||||||||| Sbjct 696 TCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATT 743 >seq2842 Length=19016 Score = 145 bits (160), Expect = 1e-29 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || || |||||||| ||||| || ||||| Sbjct 517 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAT 576 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||||| ||||| ||||| || || | | ||| || || || ||| Sbjct 577 AAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGA 636 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||| |||||||| ||| || || |||||| | || | ||||||||| Sbjct 637 ATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACT 696 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| |||||||| || || || ||||| || || ||||||||| Sbjct 697 TCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATT 744 >seq2055 Length=5446 Score = 102 bits (112), Expect = 2e-16 Identities = 107/141 (76%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 68325 GCGAATATGAGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTG 68384 || || ||||| | ||| ||||| ||||| || ||||||||||||||||| ||| ||| Sbjct 1 GCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTTGCTTA 60 Query 68385 ACGGCCTCGATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTC 68444 ||| || || ||||| | ||||| || || | ||||||||| || || || || || Sbjct 61 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTT 120 Query 68445 TTGACGAATATCTGCATTATG 68465 ||||| || || |||||| || Sbjct 121 TTGACAAAAATTTGCATTTTG 141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921551700041640