Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq4232 143 2e-29 seq253 134 1e-26 seq5784 123 2e-23 seq2842 123 2e-23 >seq4232 Length=1601 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||| | |||||||||||||| ||||||||||| || |||||| |||||| Sbjct 719 ACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCGTCTTCA 660 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 |||||||| || || |||||||||| || ||||| || || || ||||| ||||| | Sbjct 659 AGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGA 600 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 ||||| || || | | |||| ||||||| |||||||| || | ||| | || ||| Sbjct 599 ATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTG 540 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||| || || || || ||||| Sbjct 539 CCTGTTAGAGTCTTAACGAAGATTTGCAT 511 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||||||||| || ||||| ||| || |||||| |||||||||||||| || Sbjct 251 GTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGTACGGCCGTCTTCAAGTTGTTTGCCG 192 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||||||||| || |||||||| || || ||||| ||||| |||||| || || Sbjct 191 GCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATCTTCTGCTTG 132 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| |||||||| || | ||| | || ||||| || ||||| Sbjct 131 ACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTGCCTGTTAGAGTC 72 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 71 TTAACGAAGATTTGCAT 55 Score = 140 bits (154), Expect = 3e-28 Identities = 149/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||||||||| |||||||| ||| || |||||| |||||||||||||| || Sbjct 479 GTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCTTCAAGTTGTTTGCCG 420 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||||||||| || ||||| || || || ||||| ||||| |||||| || || Sbjct 419 GCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTCTGCTTG 360 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| |||||||| || | ||| | || ||||| || ||||| Sbjct 359 ACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTGCCTGTTAGAGTC 300 Query 114366 TTTACAAAAATCTGCAT 114382 || || || || ||||| Sbjct 299 TTAACGAAGATTTGCAT 283 >seq253 Length=26518 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| ||||| | || || || | |||||||| ||||| ||||| || ||| Sbjct 7839 ACCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGA 7780 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | ||||| |||||| | ||| ||||| ||| | || || | || || || ||||| Sbjct 7779 GAGGGTACGGCCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGG 7720 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||||||||||| | | ||| | || ||||| ||||||||| Sbjct 7719 AATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGAC 7660 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || | ||| | ||||| ||||| | ||||| ||||| ||||||||| Sbjct 7659 CTCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATG 7611 >seq5784 Length=6787 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||||||| | | ||| || || | ||||||||||||||||||||||| ||| Sbjct 515 ACCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGA 574 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||| ||||| ||||| || | || | || || || || ||||| Sbjct 575 TAAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGG 634 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||| |||||||| | | || | | || | ||||| || Sbjct 635 AATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTAC 694 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || || ||||| ||||||||||||||||| Sbjct 695 TTCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 742 >seq2842 Length=19016 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| |||||||| | | ||| || || | ||||||||||||||||||||||| ||| Sbjct 516 ACCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGA 575 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || || |||||| ||||| ||||| || | || | || || || || ||||| Sbjct 576 TAAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGG 635 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||| ||||| || || ||| |||||||| | | || | | || | ||||| || Sbjct 636 AATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTAC 695 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | ||||| || || ||||| ||||||||||||||||| Sbjct 696 TTCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420102976178844