Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq2855 147 4e-30 >seq2855 Length=12074 Score = 147 bits (162), Expect = 4e-30 Identities = 321/476 (67%), Gaps = 6/476 (1%) Strand=Plus/Minus Query 42391 CTGAGAACGAAAAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 |||| ||||||| || |||| |||||||||| || ||||||||||| || ||| || | Sbjct 5674 CTGATAACGAAAGGTATTTCATCAAAAACATCCTCGCCTTCTTCGCTGCTAGTGATGGTA 5615 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 | ||||| || ||||| | | | | || | || || || | || || |||| Sbjct 5614 TCGTCAACGAAAACCTTGTCGCTAACTTTGGTACCGAAGTCCAAATCCCAGAAGCCCGCT 5555 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 | || ||||| ||||| ||| || || || | ||| || ||||| | | || Sbjct 5554 GTTTTTACGGTTTCCAAATAATGATTGAAAATATCCACAGCGAAATGTACTCTATGCTTA 5495 Query 42571 TCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630 | |||| |||||| ||| || || | || | |||| ||| | | | | Sbjct 5494 TTGACACATACATCAAAGATAATGTTGAAAGAGACTTCTTACTCAATGCCGTACAAAACA 5435 Query 42631 TGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGA-GAGTCCCGACGCA 42689 | |||||||| ||||| ||||| ||||||| || | ||||| || || || || | Sbjct 5434 TCCCCTGCATAAAGAAAAAGGCTAACTGGGCCCTTGAATGGATTGATGACTCTAGAAAAA 5375 Query 42690 ACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCC 42749 | || || || || ||| || ||| | ||| || ||||| |||||| ||| || Sbjct 5374 GCTTT-GGTGAAAGATTGGCTGCTTTTTGTGTCGTAGAAGGCATATTCTTCAGTGGCTCC 5316 Query 42750 TTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTC--GATGCCCGGACTCACCTTCTCGA 42807 |||||| |||||||||||||||| | | ||| | |||||||| || || ||||| | Sbjct 5315 TTCGCCGCCATCTTCTGGCTCAA--AAAGCGTGGCCTTATGCCCGGTCTTACTTTCTCAA 5258 Query 42808 ACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTC 42863 ||||||| ||| | || || || || || || | || || | |||||| ||||| Sbjct 5257 ACGAACTTATCTGTAGAGATGAAGGTCTTCACACCGATTTCGGCTGCCTATTGTTC 5202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944266757379120