Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq3494 86.0 6e-12 seq1799 86.0 6e-12 seq719 86.0 6e-12 >seq3494 Length=9582 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| ||| || |||||||| |||| | | || || |||||||| ||| ||| | Sbjct 8835 AACATGTGGCAAGGCGGAAGAACCATGAGCTTTAAATCGCTTGGGTTCCAGGCAGACAAA 8776 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 || | ||| | ||| || || ||||| || || | ||| || | |||||| Sbjct 8775 ATAAGTCTACGGTCGAAGGGGTTCTTTTTGATAGTGTCGATAATTGACTGGAGTTGGTCG 8716 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 |||| || ||||||||||| || || | ||| ||| || || || || | |||| Sbjct 8715 TACCCTTGACCTGTATAGTCTGCGTCAGAGTCGGAGTATTTGGCGCCGAAATGGCGCCAC 8656 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGT 20591 ||||| || |||||||| || ||||| | ||||||| || Sbjct 8655 TGGAACCCATAAACAGGACCTAAATCATCTTCCCTTCGGT 8616 >seq1799 Length=18188 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| ||| || |||||||| |||| | | || || |||||||| ||| ||| | Sbjct 3289 AACATGTGGCAAGGCGGAAGAACCATGAGCTTTAAATCGCTTGGGTTCCAAGCAGACAAA 3348 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 || | ||| | ||| || || ||||| || || | ||| || | |||||| Sbjct 3349 ATTAGTCTGCGGTCGAAGGGGTTCTTTTTGATAGTGTCGATAATTGACTGGAGTTGGTCG 3408 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 |||| || ||||||||||| || || | ||| ||| || || || || | |||| Sbjct 3409 TACCCTTGACCTGTATAGTCTGCGTCAGAGTCGGAGTATTTGGCGCCGAAATGGCGCCAC 3468 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGT 20591 ||||| || |||||||| || ||||| | ||||||| || Sbjct 3469 TGGAACCCATAAACAGGACCTAAATCATCTTCCCTTCGGT 3508 >seq719 Length=29239 Score = 86.0 bits (94), Expect = 6e-12 Identities = 151/220 (69%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 20372 AACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATA 20431 |||| ||| || |||||||| |||| | | || || |||||||| ||| ||| | Sbjct 23455 AACATGTGGCAAGGCGGAAGAACCATGAGCTTTAAATCGCTTGGGTTCCAAGCAGACAAA 23396 Query 20432 ATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCA 20491 || | ||| | ||| || || ||||| || || | ||| || | |||||| Sbjct 23395 ATTAGTCTGCGGTCGAAGGGGTTCTTTTTGATAGTGTCGATAATTGACTGGAGTTGGTCG 23336 Query 20492 AACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCAC 20551 |||| || ||||||||||| || || | ||| ||| || || || || | |||| Sbjct 23335 TACCCTTGACCTGTATAGTCTGCGTCAGAGTCGGAGTATTTGGCGCCGAAATGGCGCCAC 23276 Query 20552 TGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGT 20591 ||||| || |||||||| || ||||| | ||||||| || Sbjct 23275 TGGAACCCATAAACAGGACCTAAATCATCTTCCCTTCGGT 23236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441338941189080