Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq23 113 5e-20 >seq23 Length=21893 Score = 113 bits (124), Expect = 5e-20 Identities = 597/942 (63%), Gaps = 36/942 (4%) Strand=Plus/Plus Query 114463 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 114522 ||| ||||| || || || || || || |||| || ||||| |||||||| | Sbjct 4453 AGGGAGGGCAATGGAGGCTAGGTTGCATACAGCAACTTCGTCCTTGGAGGTGTACTCAAC 4512 Query 114523 AATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 114582 ||||| || || | ||||| || ||||| || || | ||| | ||| || || || Sbjct 4513 GATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACC 4572 Query 114583 GTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 114642 ||||||||| || ||||| ||||||||||| || || || || | ||||| | | || Sbjct 4573 GTTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGAT 4632 Query 114643 AGCCTTCCAGACATCGGCGGCTGGCACAGTG--GCGTTGGC----TCGCCCCTC---CTC 114693 ||| | ||||| | ||||| ||||| ||||| || | || || | Sbjct 4633 AGCGTACCAGA-----GTTGCTGG-GCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTT 4686 Query 114694 CTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGC 114753 ||||||||| |||||| | || |||| ||||||| | || | || || || || Sbjct 4687 TTCGTACTTTAGGTAGAGCTCATCGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGC 4746 Query 114754 CTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTC 114813 | || |||||||| | ||||| | || ||| ||| || |||||| ||||| Sbjct 4747 TTCATGAGGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTC 4806 Query 114814 TGGGATCCAGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAG 114873 || ||||| || | |||| | || || |||| |||||| | || ||||| Sbjct 4807 AGGAATCCAAAGGCCGTAGAACAAGTCACGGGCGCGATTTTCTTCTTTACCGTGATTTTT 4866 Query 114874 ACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGA 114933 | ||| | ||||| || | || || | ||||| ||||| || || | |||| | Sbjct 4867 TCTCAAGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGA-AGG 4925 Query 114934 CCCCTTACGACG------ACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCG 114987 | ||| |||| || | || | || || | || || | || ||||| | Sbjct 4926 CGCCT--GGACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTG 4983 Query 114988 AAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTATTG 115045 |||||||||| ||| || | || || || || || || || ||| | | | Sbjct 4984 GAGCATTGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCC--AGTT 5041 Query 115046 GCTCTGACATCATGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCAC 115105 || | || || |||||| | || || || || || | || || |||| || ||| Sbjct 5042 GCGCGGATATTGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACAC 5101 Query 115106 TCCGTGAGACTGCCGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAG 115165 | | || | | | || || || ||||| |||||| | | ||| | || ||| | Sbjct 5102 TGGGAGATAGTATCATAAATACCTTCGATAGAGTCATCTTGCATTG---TTAGCAAGAAA 5158 Query 115166 CTCGACATT---TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATG 115222 | || || || || | || |||| |||||| ||||| || | || || | Sbjct 5159 CAGGAGCTTAGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGTA 5218 Query 115223 AACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGA 115282 || | | ||||||||| | ||| || | | | ||| | | ||||| || || Sbjct 5219 AAAAAGCGTTGGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCACCATGG 5278 Query 115283 ATACCGATCGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAGC 115342 ||||| || ||| ||||| | | |||||| ||| |||| || | ||||||| | Sbjct 5279 ATACCAATACTGACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAACT 5338 Query 115343 CTCTGGAGGTAA-CTCTTCTCCAAGGTCTTGAGACCAAAATA 115383 | | |||||| |||| || | ||| |||| |||||| || Sbjct 5339 TTGAGAAGGTAAGATCTT-TCGAGGGTTTTGAAACCAAAGTA 5379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597307775511960