Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5784 147 2e-30 seq2842 147 2e-30 seq4232 136 4e-27 seq2055 87.8 2e-12 seq253 82.4 8e-11 >seq5784 Length=6787 Score = 147 bits (162), Expect = 2e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | |||||| | ||||| || ||| Sbjct 540 TGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCTAGTTGC 599 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| |||| | || ||||| || |||||||||||||| || ||||| |||||| Sbjct 600 TTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTT 659 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 || || ||| ||| | | |||| | || ||||| | |||| ||| || || || Sbjct 660 TGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTACCTGTA 719 Query 64421 AAAGTTTTTACGAAAATTTGCATTTTAATAA 64451 | ||| ||||| ||||| |||||| ||| || Sbjct 720 AGAGTCTTTACAAAAATCTGCATTCTAAGAA 750 >seq2842 Length=19016 Score = 147 bits (162), Expect = 2e-30 Identities = 159/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 |||| || |||||||||||||||||||| || | | |||||| | ||||| || ||| Sbjct 541 TGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCTAGTTGC 600 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || |||||| |||| | || ||||| || |||||||||||||| || ||||| |||||| Sbjct 601 TTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTT 660 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 || || ||| ||| | | |||| | || ||||| | |||| ||| || || || Sbjct 661 TGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTACCTGTA 720 Query 64421 AAAGTTTTTACGAAAATTTGCATTTTAATAA 64451 | ||| ||||| ||||| |||||| ||| || Sbjct 721 AGAGTCTTTACAAAAATCTGCATTCTAAGAA 751 >seq4232 Length=1601 Score = 136 bits (150), Expect = 4e-27 Identities = 158/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | ||||| || ||||||||||| ||||||||||| | | || || |||| Sbjct 723 AAGCACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCGTC 664 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| || ||||||||| | ||||| || |||||||| || || |||||||| || || Sbjct 663 TTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTC 604 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||||| || || | || || | || ||||| | || | ||| Sbjct 603 TTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGT 544 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | ||| || ||||| |||||||| Sbjct 543 CTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 511 Score = 127 bits (140), Expect = 2e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | |||| || ||||||||||| |||||||| || | | || || |||| Sbjct 495 AAGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTC 436 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| || ||||||||| | ||||| || |||||||| || || |||||||| || || Sbjct 435 TTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTC 376 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||||| || || | || || | || ||||| | || | ||| Sbjct 375 TTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGT 316 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | ||| || ||||| |||||||| Sbjct 315 CTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 |||||| | |||| || ||||||||||| || ||||| || | | || || |||| Sbjct 267 AAGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGTACGGCCGTC 208 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||| || ||||||||| | ||||| || |||||||| || || |||||||| || || Sbjct 207 TTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTC 148 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 ||| || || ||||| || || | || || | || ||||| | || | ||| Sbjct 147 TTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGT 88 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 |||||| || | ||| || ||||| |||||||| Sbjct 87 CTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 >seq2055 Length=5446 Score = 87.8 bits (96), Expect = 2e-12 Identities = 111/152 (73%), Gaps = 2/152 (1%) Strand=Plus/Plus Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| || |||||||| || || |||||||| || ||||| ||||||||||| Sbjct 1 GCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTTGCTTA 60 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || | || || || | || | ||||||||| || | |||| Sbjct 61 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTT 120 Query 64427 TTTACGAAAATTTGCATTT--TAATAATGATA 64456 || || ||||||||||||| | |||||| || Sbjct 121 TTGACAAAAATTTGCATTTTGTGATAATGTTA 152 >seq253 Length=26518 Score = 82.4 bits (90), Expect = 8e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | ||| || || | || | || ||||| ||||| ||||| || || | Sbjct 7839 ACCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGA 7780 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || ||| || | ||||| | ||||| || || |||| || | ||||| || ||||| Sbjct 7779 GAGGGTACGGCCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGG 7720 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTAC 64368 ||||||||| || ||||| || ||||| || || Sbjct 7719 AATTCCTTCCTTATCTTGGATCTTTTGTTTGAC 7687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499606470998280