Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq5784 129 4e-25 seq2842 129 4e-25 seq4232 122 6e-23 seq2055 86.0 4e-12 seq253 86.0 4e-12 >seq5784 Length=6787 Score = 129 bits (142), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| || ||||| ||||| |||||||| |||||||| ||| || || || | ||| Sbjct 533 AACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCG--GATAAGGTGCGGCCATCT 590 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| ||| || || || | ||||| || || || || |||||||||||||| || Sbjct 591 TCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCT 650 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| ||| ||| | || |||| ||| | |||||| || | ||| |||||| Sbjct 651 TGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTT 710 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| ||||||||||| ||||| Sbjct 711 TTACCTGTAAGAGTCTTTACAAAAATCTGCAT 742 >seq2842 Length=19016 Score = 129 bits (142), Expect = 4e-25 Identities = 157/212 (74%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCG--CGTCT 15024 ||| || ||||| ||||| |||||||| |||||||| ||| || || || | ||| Sbjct 534 AACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCG--GATAAGGTGCGGCCATCT 591 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 |||| ||| || || || | ||||| || || || || |||||||||||||| || Sbjct 592 TCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCT 651 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 |||||| ||| ||| | || |||| ||| | |||||| || | ||| |||||| Sbjct 652 TGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTT 711 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 |||||||| ||||| ||||||||||| ||||| Sbjct 712 TTACCTGTAAGAGTCTTTACAAAAATCTGCAT 743 >seq4232 Length=1601 Score = 122 bits (134), Expect = 6e-23 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || |||||||| ||||| |||||||| ||||||||||| | | | | ||||||| Sbjct 719 ACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCGTCTTCA 660 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||| || | || | ||| || ||||| ||| |||||||||||||| | Sbjct 659 AGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGA 600 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || ||||| ||| | ||| || || | ||||||||| || Sbjct 599 ATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTG 540 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| || || || ||||||||| Sbjct 539 CCTGTTAGAGTCTTAACGAAGATTTGCATA 510 Score = 118 bits (130), Expect = 8e-22 Identities = 152/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| |||||||| |||||||| ||| | | | | ||||||| Sbjct 491 ACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCTTCA 432 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||| || | || | ||| || ||||| ||| |||||||||||||| | Sbjct 431 AGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGA 372 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || ||||| ||| | ||| || || | ||||||||| || Sbjct 371 ATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTG 312 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| || || || ||||||||| Sbjct 311 CCTGTTAGAGTCTTAACGAAGATTTGCATA 282 Score = 113 bits (124), Expect = 3e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || ||||| ||||| |||||||| || ||||| ||| | | | | ||||||| Sbjct 263 ACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGTACGGCCGTCTTCA 204 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | ||||||||| || | || | ||| || ||||| ||| |||||||||||||| | Sbjct 203 AGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGA 144 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || || || | || ||||| ||| | ||| || || | ||||||||| || Sbjct 143 ATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTG 84 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCATA 15177 ||||| ||||| || || || ||||||||| Sbjct 83 CCTGTTAGAGTCTTAACGAAGATTTGCATA 54 >seq2055 Length=5446 Score = 86.0 bits (94), Expect = 4e-12 Identities = 102/137 (74%), Gaps = 1/137 (1%) Strand=Plus/Plus Query 15051 ACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTAT 15110 ||| || ||||| ||| |||||||||||||| |||||| || || | || || Sbjct 12 ACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTTGCTTAACGTTGTCAAT 71 Query 15111 AGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAAT 15170 ||| ||| | ||| || || | ||| ||||| || ||||| |||||||| |||||||| Sbjct 72 AGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTTTTGACAAAAAT 131 Query 15171 TTGCATATTTGAAATAA 15187 |||||| |||| |||| Sbjct 132 TTGCAT-TTTGTGATAA 147 >seq253 Length=26518 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || | ||||| || || || |||||||| || ||||| ||||| || ||| | Sbjct 7838 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAG 7779 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || | | | ||||| ||||| || || ||| | || | | || || || ||| Sbjct 7778 AGGGTACGGCCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 7719 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 ||||||||||| || || || ||| || |||| || | ||| ||| || Sbjct 7718 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 7659 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | |||||| |||||||| || | ||||| ||||| || ||||| Sbjct 7658 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 7612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357365268977045