Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq253 152 5e-32 seq5784 114 1e-20 seq2842 114 1e-20 seq4232 113 4e-20 seq2055 104 2e-17 >seq253 Length=26518 Score = 152 bits (168), Expect = 5e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| || | || | || || || |||||||||||||| ||||| ||| | Sbjct 7838 CCACCACGGAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAG 7779 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| |||||||| || |||||| | || | || |||||| || || ||| Sbjct 7778 AGGGTACGGCCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGA 7719 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||| |||||||| || |||||||||| ||| | || |||||| || ||||| Sbjct 7718 ATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACC 7659 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| |||| ||||| ||||||| ||||| ||||| || ||||| Sbjct 7658 TCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 7612 >seq5784 Length=6787 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| ||||| || || || ||| | ||| ||| || | ||| Sbjct 540 TGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCTAGTTGC 599 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| |||||||| || || ||||| ||||| ||||||||||||||| Sbjct 600 TTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTT 659 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| | || | | || ||||| || |||||||| || | ||||| || || Sbjct 660 TGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTACCTGTA 719 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||||||| ||||| Sbjct 720 AGAGTCTTTACAAAAATCTGCAT 742 >seq2842 Length=19016 Score = 114 bits (126), Expect = 1e-20 Identities = 147/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| ||||| || || || ||| | ||| ||| || | ||| Sbjct 541 TGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTCTAGTTGC 600 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | ||||| |||||||| || || ||||| ||||| ||||||||||||||| Sbjct 601 TTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATTTTT 660 Query 45258 TGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTT 45317 ||||| | || | | || ||||| || |||||||| || | ||||| || || Sbjct 661 TGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTTACCTGTA 720 Query 45318 AGAGTTTTTACAAAAATTTGCAT 45340 ||||| ||||||||||| ||||| Sbjct 721 AGAGTCTTTACAAAAATCTGCAT 743 >seq4232 Length=1601 Score = 113 bits (124), Expect = 4e-20 Identities = 149/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| |||||||| || || ||| | || || || | |||| Sbjct 257 TGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGTACGGCCGTCTTCAAGTTGT 198 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | |||||||||||||| || || ||||| || |||||||| || Sbjct 197 TTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATCTTC 138 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || |||| || | || | ||||||||||| |||||||| || |||| || ||||| || Sbjct 137 TGCTTGA-CGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTGCCTGT 79 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || |||||||| Sbjct 78 TAGAGTCTTAACGAAGATTTGCAT 55 Score = 113 bits (124), Expect = 4e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTC 45190 ||| | ||| || || ||||| |||||||| || ||||| | || || || Sbjct 720 CACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCGTCTTC 661 Query 45191 CAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTG 45250 | |||||| || || | || | ||||||||||| || || || ||||| || ||||| Sbjct 660 AAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTG 601 Query 45251 AATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTT 45309 ||| || || |||| || | || | ||||||||||| |||||||| || |||| || | Sbjct 600 AATCTTCTGCTTGA-CGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCT 542 Query 45310 TGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||| |||||||| || || || |||||||| Sbjct 541 TGCCTGTTAGAGTCTTAACGAAGATTTGCAT 511 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| |||||||| || || ||| | || || || | |||| Sbjct 485 TGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCTTCAAGTTGT 426 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || || | || | ||||||||||| || || || ||||| || |||||||| || Sbjct 425 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTC 366 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || |||| || | || | ||||||||||| |||||||| || |||| || ||||| || Sbjct 365 TGCTTGA-CGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTGCCTGT 307 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 |||||| || || || |||||||| Sbjct 306 TAGAGTCTTAACGAAGATTTGCAT 283 >seq2055 Length=5446 Score = 104 bits (114), Expect = 2e-17 Identities = 100/126 (79%), Gaps = 2/126 (2%) Strand=Plus/Plus Query 45216 CGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTAC 45274 ||||||||||| || || || ||||| || |||||||||||||| || | || | || | Sbjct 13 CGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTTGCTT-AACGTTGTCAAT 71 Query 45275 GGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAAT 45334 ||||||||||| || || || || || | || ||||| || |||||||| |||||||| Sbjct 72 AGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTTTTGACAAAAAT 131 Query 45335 TTGCAT 45340 |||||| Sbjct 132 TTGCAT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451968525704520