Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq23 127 3e-24 >seq23 Length=21893 Score = 127 bits (140), Expect = 3e-24 Identities = 604/944 (64%), Gaps = 38/944 (4%) Strand=Plus/Plus Query 116424 AGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTAT 116483 ||| ||||| || || || || || || |||| || ||||| |||||||| | Sbjct 4453 AGGGAGGGCAATGGAGGCTAGGTTGCATACAGCAACTTCGTCCTTGGAGGTGTACTCAAC 4512 Query 116484 AATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGT 116543 ||||| || || | ||||| || ||||| || || | ||| | ||| || || || Sbjct 4513 GATTTCAGTGCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACC 4572 Query 116544 GTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAAT 116603 ||||||||| || ||||||||||| ||||| || || || || | ||||| | | || Sbjct 4573 GTTACACGCGTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGAT 4632 Query 116604 AGCCTTCCATACATCGGCGGCTGGCACAGTG--GCGTTGGC----TCGCCCCTC---CTC 116654 ||| | ||| | | ||||| ||||| ||||| || | || || | Sbjct 4633 AGCGTACCAGA-----GTTGCTGG-GCAGTGATGCGTTTGCGAGGAAGACCTTCAGTGTT 4686 Query 116655 CTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCCTCTGAGAGCCCTGGTGC 116714 ||||||||| |||||| | || |||| ||||||| | | || | || || || || Sbjct 4687 TTCGTACTTTAGGTAGAGCTCATCGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGC 4746 Query 116715 CTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTC 116774 | || || ||||| | ||||| | || ||| ||| || |||||| ||||| Sbjct 4747 TTCATGAGGGCAGAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTC 4806 Query 116775 TGGGATCCAGAGCGCCG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGA 116833 || ||||| || |||| |||| | || || |||| |||||| | || ||||| Sbjct 4807 AGGAATCCAAAG-GCCGTAGAACAAGTCACGGGCGCGATTTTCTTCTTTACCGTGATTTT 4865 Query 116834 GACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG 116893 | ||| | ||||| || | || || | ||||| ||||| || || | |||| | Sbjct 4866 TTCTCAAGTTTAAAAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGA-AG 4924 Query 116894 ACCCCTTGCGACG------ACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGC 116947 | ||| |||| || | || | || || | || |||| ||| ||||| Sbjct 4925 GCGCCT--GGACGTTTGTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTT 4982 Query 116948 GAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCCCGAA--TACGAGACTTGTT 117005 | |||||||||| ||| || | || || || || || || || ||| | ||| Sbjct 4983 GGAGCATTGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAG-CCAGTT 5041 Query 117006 GGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCA 117065 || | || || ||||||| | || || || || || | || || |||| || || Sbjct 5042 -GCGCGGATATTGTGGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATTTTAGCACA 5100 Query 117066 CTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCA 117125 || | || | | | || || || ||||| |||||| | | ||| | || ||| | Sbjct 5101 CTGGGAGATAGTATCATAAATACCTTCGATAGAGTCATCTTGCATTG---TTAGCAAGAA 5157 Query 117126 GCTCGACATT---TGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGAT 117182 | || || || || | || |||| |||||| ||||| || | || || | Sbjct 5158 ACAGGAGCTTAGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGTAGGAGAGGCATGAGT 5217 Query 117183 GAACATACCTTGGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTG 117242 || | | ||||||||| | ||| || | | | | || | | ||||| || || Sbjct 5218 AAAAAAGCGTTGGGACATGAGGTGGTAAGTTTTGATGGCGGATTGGACATCTTCACCATG 5277 Query 117243 AATACCGATTGAGACCCGCATAAACATGTATTGGGGTGTTTCCATCAGGATACCATCGAG 117302 ||||| || ||| ||||| | | |||||| ||| |||| || | ||||||| | Sbjct 5278 GATACCAATACTGACGCGCATGAGAAGGTATTGAGGTCTTTCAATGATTTTACCATCAAC 5337 Query 117303 CCTCTGGAGGTAA-CTCTTCTCCAAGGTCTTGAGACCAAAATAG 117345 | | |||||| |||| || | ||| |||| |||||| ||| Sbjct 5338 TTTGAGAAGGTAAGATCTT-TCGAGGGTTTTGAAACCAAAGTAG 5380 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613460136328920