Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq4232 125 2e-23 seq2055 89.7 1e-12 >seq4232 Length=1601 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || || ||||||| |||||||| | |||||| | || ||| Sbjct 266 AGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGTACGGCCGTCT 207 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||| ||||||||||| ||||||||||| |||||||| || Sbjct 206 TCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCT 147 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||| ||| || | ||||| | | ||| || || | || || ||| Sbjct 146 TGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTC 87 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || ||||| Sbjct 86 TTGCCTGTTAGAGTCTTAACGAAGATTTG 58 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| ||||| || || ||||||| ||||||||| | |||||| | || ||| Sbjct 494 AGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCT 435 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || || || ||||| ||||||||||| |||||||| || |||||||| || Sbjct 434 TCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 375 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||||| ||| || | ||||| | | ||| || || | || || ||| Sbjct 374 TGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTC 315 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || || || ||||| Sbjct 314 TTGCCTGTTAGAGTCTTAACGAAGATTTG 286 Score = 122 bits (134), Expect = 2e-22 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 199427 TGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGC 199486 || ||||| || || ||||||| |||||| |||| |||||| | || ||||| || || Sbjct 713 TGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCGTCTTCAAGTTGT 654 Query 199487 TTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTT 199546 || ||||| ||||||||||| |||||||| || |||||||| || |||||||| Sbjct 653 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTC 594 Query 199547 TGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTG 199606 ||||| ||| || | ||||| | | ||| || || | || || ||||| || || Sbjct 593 TGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTGCCTGTT 534 Query 199607 AGAGTTTTCACAAAAATTTG 199626 ||||| || || || ||||| Sbjct 533 AGAGTCTTAACGAAGATTTG 514 >seq2055 Length=5446 Score = 89.7 bits (98), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 3/143 (2%) Strand=Plus/Plus Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 || ||||||||||| |||||||| || |||||||| || ||||| |||||||| Sbjct 1 GCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTTGCTTA 60 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| || | ||||| | | ||| || || | ||||| ||||| || || |||||| Sbjct 61 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTT 120 Query 199613 TTCACAAAAATTTGGTACATTTT 199635 || ||||||||||| |||||| Sbjct 121 TTGACAAAAATTTG---CATTTT 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178828901026179