Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq5784 89.7 4e-13 seq2842 89.7 4e-13 >seq5784 Length=6787 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | ||| ||||||||| || || || |||| Sbjct 516 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAT 575 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | ||| || ||| ||||||| || || |||||||| | || Sbjct 576 AAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGA 635 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || ||||||||||||| || | | | || | ||| || Sbjct 636 ATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACT 695 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || |||||||| || | ||| ||||| || |||||||| Sbjct 696 TCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 742 >seq2842 Length=19016 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || | ||| || ||||| || | ||| ||||||||| || || || |||| Sbjct 517 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAT 576 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 || ||| |||| || | ||| || ||| ||||||| || || |||||||| | || Sbjct 577 AAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGA 636 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||||| || || ||||||||||||| || | | | || | ||| || Sbjct 637 ATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACT 696 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || | || || |||||||| || | ||| ||||| || |||||||| Sbjct 697 TCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 743 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347343618599321