Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq2855 123 2e-23 seq4232 116 4e-21 seq253 111 2e-19 seq5784 87.8 2e-12 seq2842 87.8 2e-12 >seq2855 Length=12074 Score = 123 bits (136), Expect = 2e-23 Identities = 396/609 (65%), Gaps = 19/609 (3%) Strand=Plus/Plus Query 132883 TTGAACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTG 132942 ||||||| | ||| | || ||| || | || || || || | || |||||||| Sbjct 5200 TTGAACAATAGGCAGCCGAAATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTT 5259 Query 132943 CTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTG 133002 |||||| | |||||||| ||||| || ||||||||||| || ||||||||||| | Sbjct 5260 GAGAAAGTAAGACCGGGCATAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAG 5319 Query 133003 CCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCT 133062 || ||||| | ||| || ||| | ||||| ||| | || || || ||| Sbjct 5320 CCACTGAAGAATATGCCTTCTACGACACAAAAAGCAGCCAATCTTTCACCAAA----GCT 5375 Query 133063 TCTTTGCTGGCG------ATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGC 133116 | || || | | ||||| || ||||| | ||||||| || | ||| || Sbjct 5376 TTTT--CTAGAGTCATCAATCCATTCAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGG 5433 Query 133117 ATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCCGAGGAACGC--ACGTAGGTGT 133174 || ||| | ||| || | || | ||| ||| | | | | | ||| |||| Sbjct 5434 ATGTTTTGTACGGCATTGAGTAA--GAAGTCTCTTTCAACATTATCTTTGATGTATGTGT 5491 Query 133175 CGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAA 133234 | || || | || |||||||| ||| | || || || ||||| || ||||||| Sbjct 5492 CAATAAGCATAGAGTACATTTCGCTGTGGATATTTTCAATCATTATTTGGAAACCGTAAA 5551 Query 133235 AGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGA 133294 | || || || || | || ||||| | | || |||| || |||||||||| Sbjct 5552 AACAGCGGGCTTCTGGGATTTGGACTTCGGTACCAAAGTTAGCGACAAGGTTTTCGTTGA 5611 Query 133295 CGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGT 133354 |||| || || || || ||||| ||||| || | || |||||||||| | ||||| | Sbjct 5612 CGATACCATCACTAGCAGCGAAGAAGGCGAGGATGTTTTTGATGAAATACCTTTCGTTAT 5671 Query 133355 C-GTT--CAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCC 133411 | ||| | | ||||||| | ||||| | ||||| || || || || || |||| Sbjct 5672 CAGTTAGCTTGTTTTCCCAGTGTTGAGTGTCATGAGACAGATCGACTTCTTCAACAGTCC 5731 Query 133412 AAAACGACGCCTCGGCTTTTTTGTACATACTCCACATGTCCGAATATTGTATGGGAAAAA 133471 | || || || |||||||||||||| ||| || || ||| ||| || || | Sbjct 5732 AGAAACTGGCTTCAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGA 5791 Query 133472 TCACAAACC 133480 |||||||| Sbjct 5792 GCACAAACC 5800 >seq4232 Length=1601 Score = 116 bits (128), Expect = 4e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| ||||| ||| | || ||||| | || Sbjct 283 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 342 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| || ||||| || | ||||| Sbjct 343 GACACTATTGACAACG-TCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCA 401 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || |||||||| || || |||| || || | ||||||||| Sbjct 402 GCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAA 461 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || || || |||||||| ||| | ||||| || Sbjct 462 CATCCAAAAAGAATCTACTCTTCACTTGGTGCTTCGTCTCAGAGGTGG 509 Score = 111 bits (122), Expect = 2e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| ||||| ||| | || ||||| | || Sbjct 511 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 570 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| || ||||| || | ||||| Sbjct 571 GACACTATTGACAACG-TCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCA 629 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | || |||||||| || || |||| || || | || ||||| Sbjct 630 GCAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAA 689 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||| | || || ||||||||||| ||| | ||||| || Sbjct 690 CATCCAAAAAGAATCTACTCTTCATTTGGTGCTTCGTCTTAGAGGTGG 737 >seq253 Length=26518 Score = 111 bits (122), Expect = 2e-19 Identities = 154/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || || ||||| || ||| |||| ||||| || || Sbjct 7612 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 7671 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | ||||| | ||| |||| |||| || || || |||||||| | || || Sbjct 7672 GACTCCATCGAAAACG-TCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 7730 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || | || |||| ||| || || || |||| || | || |||||| |||||| || Sbjct 7731 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGCCGTACCCTCTCCGACTATAA 7790 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||||||||||| | || || || ||||| || Sbjct 7791 CATCCAAAAGGAATCTACCCTCCACTTGGTCCT 7823 >seq5784 Length=6787 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || ||||| || || || || |||||||| ||| |||| || || | | Sbjct 743 AATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTC 684 Query 38303 CGAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || | || | || | ||||| ||||||| | || || || |||||||| | || Sbjct 683 TGATTCTATCGAG--AATG-TTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGA 627 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || | |||| || || || || || || || | |||||| | |||||| Sbjct 626 TCAGCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTA 567 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| ||| | || || || ||||| || ||| Sbjct 566 CAACATTCAAAAAGAATCTACTCTTCACTTGGTTCTCCGT 527 >seq2842 Length=19016 Score = 87.8 bits (96), Expect = 2e-12 Identities = 153/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || ||||| || || || || |||||||| ||| |||| || || | | Sbjct 744 AATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTC 685 Query 38303 CGAC---AGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 || | || | || | ||||| ||||||| | || || || |||||||| | || Sbjct 684 TGATTCTATCGAG--AATG-TTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGA 628 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || || | |||| || || || || || || || | |||||| | |||||| Sbjct 627 TCAGCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTA 568 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| ||| | || || || ||||| || ||| Sbjct 567 CAACATTCAAAAAGAATCTACTCTTCACTTGGTTCTCCGT 528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500134430494080