Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq23 111 2e-19 >seq23 Length=21893 Score = 111 bits (122), Expect = 2e-19 Identities = 596/942 (63%), Gaps = 38/942 (4%) Strand=Plus/Minus Query 111546 TATTTTGGTCTCAAGACCCTCGAGAAAAGCTACCTCCAAAGACTGGATGGTGTCTTGATG 111605 || |||||| |||| |||||||| | | ||||| | | | | |||||| | || Sbjct 5379 TACTTTGGTTTCAAAACCCTCGAAAGATCTTACCTTCTCAAAGTTGATGGTAAAATCATT 5320 Query 111606 GAAACCCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGAT 111665 |||| || || ||| | ||||||| ||| || ||||||||||| |||||| | | Sbjct 5319 GAAAGACCTCAATACCTTCTCATGCGCGTCAGTATTGGTATCCATGGTGAAGATGTCCAA 5260 Query 111666 TCTGTTTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACC 111725 || | | | || ||| || ||||||| | | || | || || | || ||| Sbjct 5259 TCCGCCATCAAAACTTACCACCTCATGTCCCAACGCTTTTTTACTCATGCCTCTCCTACC 5200 Query 111726 CTCTTCAACGCTGGTACACCAAGACCCCA---AATGTCCAGTTGTTTCCTTATTGCAAAC 111782 || |||||| |||| || | || || || ||| |||||| |||| ||| Sbjct 5199 CTTTTCAACTCTGGAACTAATCGCCCTCAGCTAAGCTCC---TGTTTC----TTGCTAAC 5147 Query 111783 A----AGGAGGATTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTC 111838 | | || || || ||| | || ||||| | ||| || | | ||||| |||| || Sbjct 5146 AATGCAAGATGACTCTATCGAAGGTATTTATGATACTATCTCCCAGTGTGCTAAAATTTC 5087 Query 111839 AAAGTGGGCTGGTGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGT-- 111896 || | |||||||| ||||| | |||||| || || | | |||| | ||| | Sbjct 5086 CAAATCTGCTGGTGGAATCGGCCTCAGCATCCACAATATCCGCG-CAAC-TGGCTCCTAC 5029 Query 111897 ATTAGAGGTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCC 111956 ||| || || || ||| || | || || |||||||||| | ||||| ||| | Sbjct 5028 ATTGCTGGAACTAACGGTACCTCCAACGGAATCGTTCCAATGCTCCAAGTATTCAACACA 4969 Query 111957 ACAGCGCGCTATGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTAT 112010 || || || || || | |||| || |||| || || | |||| | ||| Sbjct 4968 ACCGCTCGATACGTCGATCAAGGCGGCAACAAACGTC-CA--GGCGCCTTCGCCATTTAT 4912 Query 112011 CTTGAGCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGAT 112070 ||||| |||||||| | || || | || || | | ||| | || || ||| | Sbjct 4911 CTTGAACCATGGCATTCTGACATTTTTGAATTTTTAAACTTGAGAAAAAATCACGGTAAA 4852 Query 112071 GAGGAGGCGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAG 112130 || || || ||| || | |||| || || |||||||| || || |||||| Sbjct 4851 GAAGAAAATCGCGCCCGTGACTTGTTCTACGGCCTTTGGATTCCTGACCTTTTCATGCGC 4792 Query 112131 AGAGTTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCC 112190 | ||| ||| | ||| | ||||| | || || || | | || || ||||| | Sbjct 4791 CGCGTTTTGGAAAACGGCGACTGGTCATTATTCTGCCCTCATGAAGCTCCTGGTCTAGCT 4732 Query 112191 GATGCCGTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGA---AGAAAGT--- 112244 || | |||||| |||| || | |||||| ||||||||| | ||| || Sbjct 4731 GACGTTTGGGGTGAAAAGTTCGATGAGCTCTACCTAAAGTACGAAAACACTGAAGGTCTT 4672 Query 112245 -CGGGCGACTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAAC 112303 | || | || | |||| | || | | ||| | ||||| | | || || | Sbjct 4671 CCTCGCAAACGCATCACTGCC--CAGC--AACTCTGGTACGCTATCTTAGATTCCCAGAT 4616 Query 112304 CGAGACTGGTACACCATATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAA 112363 ||| |||||||| ||||| ||||| ||||||||||| |||||| || ||| ||| | Sbjct 4615 CGAAACTGGTACTCCATACATGCTCTACAAAGACGCGTGTAACGGTAAATCTAACCAACA 4556 Query 112364 GAATTTGGGTGTGATCAAGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAA 112423 || | || || || || || ||||| || || |||||| | || | || ||| Sbjct 4555 AAACCTCGGAACAATTAAAAGCTCAAACCTATGCACTGAAATCGTTGAGTACACCTCCAA 4496 Query 112424 AGATGAGACGGCTGTGTGTAACCTCGCATCAATCGCTCTCCC 112465 || || ||||| || ||||| || || || || ||||| Sbjct 4495 GGACGAAGTTGCTGTATGCAACCTAGCCTCCATTGCCCTCCC 4454 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620694781298640