Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq2549 104 3e-17 >seq2549 Length=36390 Score = 104 bits (114), Expect = 3e-17 Identities = 181/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||||| || ||| || || | || ||||| || || || || ||||| || || ||||| Sbjct 33655 CAAAGATTCGGTGTTTCTCTTGGTTATGGTGGACCCCACGCCGCATTTTTCGCTACAACT 33714 Query 153828 GACA-AGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGG 153886 || | || ||||| || | || || | | ||||| || || |||| | |||| Sbjct 33715 GATGCACTA-AAGAGGAAAGTCCCAGGTCGTTTAGTAGGCGTATCCGTTGATACTAAAGG 33773 Query 153887 TAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGC 153946 | || ||||| ||| | || || || || | || || ||||| || ||||||||||| Sbjct 33774 TCGTACTGCATATAGACTTGCTCTTCAAACCCGTGAACAACATATTAGAAGAGACAAAGC 33833 Query 153947 AACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAATATGTCTGGATTCTATGCAGC 154006 || |||||||| || |||||||| || | || || ||||||| | || |||| Sbjct 33834 TACTTCAAACATCTGTACCGCTCAGGCCCTCTTAGCAAACATGTCTGCCATGTACGCAGT 33893 Query 154007 ATATCATGGTGCAGATGGACT 154027 ||||| ||| |||| || || Sbjct 33894 CTATCACGGTCCAGAAGGTCT 33914 Score = 95.1 bits (104), Expect = 1e-14 Identities = 183/265 (69%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 154864 TGTCATGTATTATGATTACATACCCATCTACACATGGTGTATTTGAAACTAACATTAGAC 154923 |||| | | ||||||||||||||||||| || | || | || ||| ||| | | Sbjct 34790 TGTCTTCTGTTATGATTACATACCCATCCACTTACGGAATTTTCGAAGAAGGCATCAAAG 34849 Query 154924 A-GATATGTAAGATCGTTCATGACAATGGTGGTCAGGTATATCTTGATGGAGCAAATCTA 154982 | | || ||||| ||||| || ||||||||||| || ||| | || || ||||| | Sbjct 34850 AAGCTACC-AAGATTGTTCACGATAATGGTGGTCAAGTTTATATGGACGGTGCAAACTTG 34908 Query 154983 AATGCACAGGTAGGACTAGCAAAACCATGTGAGTAT-GGTGCAGATGTATGTCATCTAAA 155041 |||||||| | || || | || ||| |||| ||| || || ||||| || || | || Sbjct 34909 AATGCACAAATTGGTATAACTAACCCAGGTGA-TATGGGAGCTGATGTTTGCCACATCAA 34967 Query 155042 CTTACATAAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGG 155101 |||||| | | ||| |||| || || || || || ||||| || ||||| || | Sbjct 34968 TAATCATAAATCTCTATGTGTTCCTCACGGCGGAGGTGGGCCTGGAGTTGGTCCAATTTG 35027 Query 155102 TGTAGCAAAACATCTCACACCATTT 155126 ||| ||| || || | |||||| Sbjct 35028 TGTTAAAAAGCACCTGATTCCATTT 35052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579168367138080