Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq2549 113 5e-20 >seq2549 Length=36390 Score = 113 bits (124), Expect = 5e-20 Identities = 187/265 (71%), Gaps = 4/265 (2%) Strand=Plus/Plus Query 159539 TGTCATGTATTATGATTACATATCCATCTACACATGGTGTATTTGAAACAAACATCAGAC 159598 |||| | | ||||||||||||| ||||| || | || | || ||| | ||||| | Sbjct 34790 TGTCTTCTGTTATGATTACATACCCATCCACTTACGGAATTTTCGAAGAAGGCATCAAAG 34849 Query 159599 A-GATATGTAAGATTGTTCATGAGAATGGTGGTCAGGTATATCTTGATGGTGCAAATCTA 159657 | | || ||||||||||| || ||||||||||| || ||| | || |||||||| | Sbjct 34850 AAGCTACC-AAGATTGTTCACGATAATGGTGGTCAAGTTTATATGGACGGTGCAAACTTG 34908 Query 159658 AATGCACAGGTAGGTCTAGCAAAACCATGTGACTAT-GGTGCAGATGTATGTCATCTAAA 159716 |||||||| | ||| || | || ||| |||| ||| || || ||||| || || | || Sbjct 34909 AATGCACAAATTGGTATAACTAACCCAGGTGA-TATGGGAGCTGATGTTTGCCACATCAA 34967 Query 159717 CTTACATAAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGG 159776 ||||| | | ||| |||| || || || || || ||||| || ||||| ||| | Sbjct 34968 TAATCATAAATCTCTATGTGTTCCTCACGGCGGAGGTGGGCCTGGAGTTGGTCCAATTTG 35027 Query 159777 TGTAGCAAAACATCTCACACCATTT 159801 ||| ||| || || | |||||| Sbjct 35028 TGTTAAAAAGCACCTGATTCCATTT 35052 Score = 89.7 bits (98), Expect = 6e-13 Identities = 178/261 (68%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 ||||| || ||| || || | || || || || || || || ||||| || || ||||| Sbjct 33655 CAAAGATTCGGTGTTTCTCTTGGTTATGGTGGACCCCACGCCGCATTTTTCGCTACAACT 33714 Query 158503 GACA-AGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGG 158561 || | || ||||| || | || || | | ||||| || || |||| |||| Sbjct 33715 GATGCACTA-AAGAGGAAAGTCCCAGGTCGTTTAGTAGGCGTATCCGTTGATACTAAAGG 33773 Query 158562 TAATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGC 158621 | || ||||| ||| | || || || || | || || ||||| |||||||||||||| Sbjct 33774 TCGTACTGCATATAGACTTGCTCTTCAAACCCGTGAACAACATATTAGAAGAGACAAAGC 33833 Query 158622 AACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAATATGTCTGGGTTCTATGCAGC 158681 || |||||||| || || || || || | || || ||||||| | || |||| Sbjct 33834 TACTTCAAACATCTGTACCGCTCAGGCCCTCTTAGCAAACATGTCTGCCATGTACGCAGT 33893 Query 158682 ATATCATGGTGCAGATGGACT 158702 ||||| ||| |||| || || Sbjct 33894 CTATCACGGTCCAGAAGGTCT 33914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588006089122320