Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq4232 179 8e-40 seq5784 156 9e-33 seq2842 156 9e-33 seq253 147 5e-30 seq2055 134 3e-26 >seq4232 Length=1601 Score = 179 bits (198), Expect = 8e-40 Identities = 173/222 (78%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || | ||||||||| || |||||||| || ||||| |||| | ||| Sbjct 504 TCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGT 445 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || || || || || ||||| || ||||| |||||||| || || || Sbjct 444 ACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCC 385 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||||||| || ||||||||||| ||||| ||||| ||| ||| |||||||| Sbjct 384 TTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAG 325 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| ||||| | ||| || ||||| | |||||| Sbjct 324 GGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 Score = 178 bits (196), Expect = 3e-39 Identities = 161/203 (79%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| || |||||||| || |||||||| | | ||| | || ||||| || || Sbjct 713 TGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCGTCTTCAAGTTGT 654 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || || ||||| || ||||| |||||||| || || ||||| ||||||||||| || Sbjct 653 TTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTC 594 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||||||||||| ||||| ||||| ||| ||| ||||||||||||| ||||| ||||| Sbjct 593 TGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTGCCTGTT 534 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 | ||| || ||||| | |||||| Sbjct 533 AGAGTCTTAACGAAGATTTGCAT 511 Score = 176 bits (194), Expect = 1e-38 Identities = 172/222 (77%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 194919 TCTGAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGT 194978 |||||| | | || | ||||||||| || |||||||| || ||||| |||| | ||| Sbjct 276 TCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGT 217 Query 194979 TCTCCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCC 195038 | || ||||| || || || || || ||||| || ||||| ||||| || || || || Sbjct 216 ACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCC 157 Query 195039 TTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAG 195098 ||| ||||||||||| || ||||||||||| ||||| ||||| ||| ||| |||||||| Sbjct 156 TTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAG 97 Query 195099 GGTAACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||||| ||||| ||||| | ||| || ||||| | |||||| Sbjct 96 GGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 >seq5784 Length=6787 Score = 156 bits (172), Expect = 9e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| || ||||||||||| ||||| |||| | || | |||||||| Sbjct 533 AACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTC 592 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| || || || | ||||| || ||||||||||| ||||| || ||||| Sbjct 593 TAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTG 652 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||||||| || || ||||| || | || ||| ||| ||||| ||||| | || || Sbjct 653 AATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTT 712 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||| ||||| || | |||||| Sbjct 713 ACCTGTAAGAGTCTTTACAAAAATCTGCATT 743 >seq2842 Length=19016 Score = 156 bits (172), Expect = 9e-33 Identities = 161/211 (76%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| || ||||||||||| ||||| |||| | || | |||||||| Sbjct 534 AACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCTTC 593 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 || |||||||| || || || | ||||| || ||||||||||| ||||| || ||||| Sbjct 594 TAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTG 653 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 ||||||||| || || ||||| || | || ||| ||| ||||| ||||| | || || Sbjct 654 AATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGGTTTT 713 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | ||| ||||| || | |||||| Sbjct 714 ACCTGTAAGAGTCTTTACAAAAATCTGCATT 744 >seq253 Length=26518 Score = 147 bits (162), Expect = 5e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 194922 GAGTCTCAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCT 194981 |||||| | || | ||| || || || || ||||| || || || |||| || || | Sbjct 7830 GAGTCTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAGAGGGTACG 7771 Query 194982 CCCATCTTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTC 195041 |||||||| | |||||||||||||| ||||||| ||| || ||||||||||| ||||| Sbjct 7770 GCCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTC 7711 Query 195042 TTTGTCTTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGT 195101 || ||||| || ||||| |||||||| || |||| ||| || ||| || || ||||| Sbjct 7710 CTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGT 7651 Query 195102 AACCGTCTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || || || || || ||||| || || | ||||| Sbjct 7650 AATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGCAT 7612 >seq2055 Length=5446 Score = 134 bits (148), Expect = 3e-26 Identities = 113/139 (81%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 195004 GCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTG 195063 || ||||| || ||||| |||||||| || || ||||| |||||||||||||||||||| Sbjct 1 GCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTTGCTTA 60 Query 195064 ACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTT 195123 ||||| ||||| ||||| ||| ||| || |||||||| | ||||| ||||| | |||| Sbjct 61 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTT 120 Query 195124 TTTACGAACACTTGCATTT 195142 || || || | |||||||| Sbjct 121 TTGACAAAAATTTGCATTT 139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109394361115079