Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq2855 217 2e-51 seq23 114 1e-20 >seq2855 Length=12074 Score = 217 bits (240), Expect = 2e-51 Identities = 605/923 (66%), Gaps = 5/923 (1%) Strand=Plus/Plus Query 18656 TCATTACTCCCATTTTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCT 18715 |||| || || |||||| || ||| || | ||||||||||| ||||| || || | Sbjct 4907 TCATGACACCAGCTTTTTGGTAGTCGCTGACGCGCTTTTCAAAGAAGTTAGTCTTGCCTT 4966 Query 18716 CTAATGATATACAT-TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAAT 18774 | || || ||| ||||| ||||| ||||| || | || | ||| ||| ||| Sbjct 4967 GCATAGAGAT-CATATCCATGAAATCGAATGGGTTGGTGACGTGATAATGTTTGGAGAAG 5025 Query 18775 CCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAA 18834 || | || || | | || || ||||||| ||| || | ||| | | | | Sbjct 5026 CCAAGAGACAAAAGCAAGCGGTCAGCAACAAATTCAATGTACTGGGACATTAGCTTGCTA 5085 Query 18835 TTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACT 18894 ||||||||||| | ||||||| || || || | |||||||||||||| | || Sbjct 5086 TTCATTCCTATAAGAGAGACAGGTAATGAGTCAGTTAAGAATTCTTGTTCTATGGTAACG 5145 Query 18895 GCCTCTGATATAATAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAAC 18954 || || | | ||| | || | | |||||| ||| || | || | ||| ||| Sbjct 5146 GCGTCAGCAACAATGGCTAATATCGTTTCTTCAGAAGGTTTGTTGACGAGGTATTTGAAC 5205 Query 18955 ATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAAT 19014 | | || | ||||| || || || || ||||||| || | ||| || || || Sbjct 5206 AATAGGCAGCCGAAATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCGTTTGAGAAA 5265 Query 19015 GTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAA 19074 || | ||| ||||| || || | ||||| | |||||| || | || || || ||| Sbjct 5266 GTAAGACCGGGCATAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAGGAGCCACTG 5325 Query 19075 AAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTA 19134 |||||||| |||||||| | ||||||| | | |||||| ||| | || | Sbjct 5326 AAGAATATGCCTTCTACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTTTTTCTAGAG 5385 Query 19135 TTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATA 19194 | || |||||||| || ||||| | |||||| || |||| || || || | | || Sbjct 5386 TCATCAATCCATTCAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATGTTTTGTACG 5445 Query 19195 GAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTG 19254 | ||| | || | | ||| | ||||||| | |||| || || | | | | Sbjct 5446 GCATTGAGTAAGAAGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATAAGCATAGAG 5505 Query 19255 TACATTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCT 19314 |||||||| || |||||||| || || || || ||||||||||| | |||||| Sbjct 5506 TACATTTCGCTGTGGATATTTTCAATCATTATTTGGAAACCGTAAAAACAGCGGGCTTCT 5565 Query 19315 GTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTA 19374 | || || ||||| ||| ||| | |||| | ||||| || || || ||||||||| Sbjct 5566 GGGATTTGGACTTCGGTACCAAAGTTAGCGACAAGGTTTTCGTTGACGATACCATCACTA 5625 Query 19375 GCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA--TGTAT 19432 || || || || || | | | ||| || |||| |||| | |||| ||| | Sbjct 5626 GCAGCGAAGAAGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCAGTTAGCTTGTTT 5685 Query 19433 TCCAATCATTAA-TATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCT 19491 ||| | || | | || | ||| | ||| ||||||||||| ||||| ||| || || Sbjct 5686 TCCCAGTGTTGAGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAGAAACTGGCTTCA 5745 Query 19492 GCTTTTTTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTT 19551 |||||||| ||||| | |||||| || | ||| ||| || || | ||||| |||||| Sbjct 5746 GCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGCACAAACCTATTT 5805 Query 19552 TTATTTTCTTTAAGAATAGGTTC 19574 ||| |||||||| ||| || Sbjct 5806 GGATTGGGTTTAAGAAGAGGCTC 5828 >seq23 Length=21893 Score = 114 bits (126), Expect = 1e-20 Identities = 354/544 (65%), Gaps = 8/544 (1%) Strand=Plus/Plus Query 48263 TTCTTCATTGCCACTATTCCTTTT-AAGTTCAAGAAAGTCCATTATATCAGCATGCCATG 48321 |||||| || || ||| || | ||||| || ||| || | || |||| |||||||| Sbjct 4846 TTCTTCTTTACCGTGATTTTTTCTCAAGTTTAA-AAATTCAAAAATGTCAGAATGCCATG 4904 Query 48322 GTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGG 48381 |||| | ||| || || | | ||||| ||||| || || |||||||| | |||| | Sbjct 4905 GTTCAAGATAAATGGCGAAGGCGCCTGGACGTTTGTTGCCGCCTTGATCGACGTATCGAG 4964 Query 48382 CAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCG 48441 | || |||| | ||| | |||||| || || || || || |||| || ||||| | Sbjct 4965 CGGTTGTGTTGAATACTTGGAGCATTGGAACGATTCCGTTGGAGGTACCGTTAGTTCCAG 5024 Query 48442 AAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTT 48501 ||| || ||| | || | ||||| || | || || ||||| || || Sbjct 5025 CAATGTAGGAGCCAGTTGCGCGGATATTGTGGATGCTGAGGCCGATTCCACCAGCAGATT 5084 Query 48502 TAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCA 48561 | || ||| ||||||| | | ||||||||||| ||||| ||| |||||| || Sbjct 5085 TGGAAATTTTAGCACACTGGGAGATAGTATCATAAATACCTTCGATAGAGTCATCTTGCA 5144 Query 48562 TATTTAATAGAAAACAACTAGACATT---TGCGGATGACAAGTTCCTGAATTAAATAATG 48618 || ||| || ||| || || || || || |||||| || || || | | Sbjct 5145 ---TTGTTAGCAAGAAACAGGAGCTTAGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGG 5201 Query 48619 TTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAAT 48678 | ||||| |||||| |||| | | || | | | || |||| || | || | Sbjct 5202 TAGGAGAGGCATGAGTAAAAAAGCGTTGGGACATGAGGTGGTAAGTTTTGATGGCGGATT 5261 Query 48679 CTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAA 48738 | ||| ||| ||||| ||| || ||||| | | |||||||||||||||| Sbjct 5262 GGACATCTTCACCATGGATACCAATACTGACGCGCATGAGAAGGTATTGAGGTCTTTCAA 5321 Query 48739 CAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGT 48798 ||||| || | ||| | ||| || ||| |||| | ||||| |||||||| |||| Sbjct 5322 TGATTTTACCATCAACTTTGAGAAGGTAAGATCTTTCGAGGGTTTTGAAACCAAAGTAGT 5381 Query 48799 TGTA 48802 | || Sbjct 5382 TATA 5385 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562065679228680