Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq2855 131 2e-25 >seq2855 Length=12074 Score = 131 bits (144), Expect = 2e-25 Identities = 396/610 (65%), Gaps = 9/610 (1%) Strand=Plus/Plus Query 37161 TATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCA 37220 ||||| ||||||| || | ||||| || | |||||||||||||| || | ||| Sbjct 5197 TATTTGAACAATAGGCAGCCGAAATCGGTGTGAAGACCTTCATCTCTACAGATAAGTTCG 5256 Query 37221 TTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAA 37280 || || || || | || ||||| | || | ||||| | ||| || || || || || Sbjct 5257 TTTGAGAAAGTAAGACCGGGCATAAGGCCACGCTTTTTGAGCCAGAAGATGGCGGCGAAG 5316 Query 37281 GATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTT 37340 || ||| ||||| || ||||| || | ||| || | | | | ||| || || Sbjct 5317 GAGCCACTGAAGAATATGCCTTCTACGACACAAAAAGCAGCCAATCTTTCACCAAAGCTT 5376 Query 37341 GAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATT 37400 ||| | ||| |||||||| | ||| | |||||| || | || || Sbjct 5377 TTTCTAGAGTCATCAATCCATTCAAGGGCCCAGTTAGCCTTTTTCTTTATGCAGGGGATG 5436 Query 37401 GTTTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATT 37460 ||| | || || | | |||| | |||| || ||||| | || || || ||||| Sbjct 5437 TTTTGTACGGCATTGAGTAAGAAGTCTCTTTCAACATTATCTTTGATGTATGTGTCAATA 5496 Query 37461 AGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACAC 37520 || | | |||||||| ||| ||||||||||| ||| || ||||| |||||||| Sbjct 5497 AGCATAGAGTACATTTCGCTGTGGATATTTTCAATCATTATTTGGAAACCGTAAAAACAG 5556 Query 37521 CTAGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAG---CTAAGTTTTCATTAACT 37577 | ||||| | | ||| || ||| || ||| |||| | | |||||| || || Sbjct 5557 CGGGCTTCTGGGATTTGGACTTCGGTACCAAA---GTTAGCGACAAGGTTTTCGTTGACG 5613 Query 37578 ATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTC---ATCA 37634 || ||||||||||| || ||||| || || | | ||| || |||| ||||| |||| Sbjct 5614 ATACCATCACTAGCAGCGAAGAAGGCGAGGATGTTTTTGATGAAATACCTTTCGTTATCA 5673 Query 37635 TTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAA 37694 || |||| ||| | | | | || | || | ||| ||||| ||||| ||||| Sbjct 5674 GTTAGCTTGTTTTCCCAGTGTTGAGTGTCATGAGACAGATCGACTTCTTCAACAGTCCAG 5733 Query 37695 AAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATT 37754 ||||| || || ||| ||||| ||| || || | || |||||| || | Sbjct 5734 AAACTGGCTTCAGCTTTTTTGTACATTTGCCATATTTCGTGCCATTTTATTGGGAAGAGC 5793 Query 37755 ACAAATCTAT 37764 ||||| |||| Sbjct 5794 ACAAACCTAT 5803 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592271361897480