Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq5784 104 2e-17 seq2842 104 2e-17 seq253 84.2 2e-11 >seq5784 Length=6787 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | ||||| || || || ||||||||||| ||||| || ||| Sbjct 516 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAT 575 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || || | |||||||||||||| |||| || || ||||| | ||| Sbjct 576 AAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGA 635 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||| |||||||| ||| | | ||| || || | || || Sbjct 636 ATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACT 695 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | ||| ||||||||||||||||| Sbjct 696 TCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 742 >seq2842 Length=19016 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 48540 CCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGAT 48599 || || | ||| || | ||||| || || || ||||||||||| ||||| || ||| Sbjct 517 CCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGAT 576 Query 48600 AGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGA 48659 | | || | || || | |||||||||||||| |||| || || ||||| | ||| Sbjct 577 AAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGA 636 Query 48660 ACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACC 48719 | || ||||| || ||| |||||||| ||| | | ||| || || | || || Sbjct 637 ATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACT 696 Query 48720 TCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || | || || ||||| || || | ||| ||||||||||||||||| Sbjct 697 TCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 743 >seq253 Length=26518 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || || ||||| || || || || || || | || | || ||| Sbjct 7820 ACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAGAGGGTACGGCCATCTTCC 7761 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 || |||||||| || || || |||| || ||||| | |||| || ||||| || Sbjct 7760 AATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGG 7701 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||||||||| || | | || || || | || ||||| | ||||| ||||| Sbjct 7700 ATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTTTTA 7641 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||| ||||| |||||||| Sbjct 7640 CCGGTTAAGGTTTTGACAAAGATCTGCAT 7612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380909107891251