Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq23 120 2e-22 >seq23 Length=21893 Score = 120 bits (132), Expect = 2e-22 Identities = 257/379 (68%), Gaps = 4/379 (1%) Strand=Plus/Plus Query 25983 TTTCTTCTTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATG 26042 |||||||||| |||||||| ||| | | | ||| || |||||||| || || ||||||| Sbjct 4845 TTTCTTCTTTACCGTGATTTTTTCTCAAGTTTAAAAATTCAAAAATGTCAGAATGCCATG 4904 Query 26043 GTTCTAAATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTG 26102 |||| | ||| || || || ||| | ||| || |||||||| ||||||| | Sbjct 4905 GTTCAAGATAAATGGCGAAGGCGCCTGGACGTTTGTTGCCGCCTTGATCGACGTATCGAG 4964 Query 26103 CAGTTTCATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAAT-CCGTTTGTGCTA 26161 | ||| ||||| |||| | ||||||||| | ||| |||| | | ||||| || | | Sbjct 4965 CGGTTGTGTTGAATACTTGGAGCATTGGAACGATTCC-GTTGGAGGTACCGTTAGTTCCA 5023 Query 26162 TGAATCTTGGATCCTGTCGATCTAATATCGT-GAGCATGAATACCGATTCCACCAGCCCA 26220 ||| | ||| || || | | |||| || || || | |||||||||||||| | Sbjct 5024 GCAATGTAGGAGCCAGTTGCGCGGATATTGTGGATGCTG-AGGCCGATTCCACCAGCAGA 5082 Query 26221 TTTTGAAATAGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTT 26280 ||| ||||| ||||| | || | ||||| |||| |||| || ||| ||| Sbjct 5083 TTTGGAAATTTTAGCACACTGGGAGATAGTATCATAAATACCTTCGATAGAGTCATCTTG 5142 Query 26281 CATTCCTAATAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGT 26340 |||| || || ||||| || || || | || | ||||| || || || | || Sbjct 5143 CATTGTTAGCAAGAAACAGGAGCTTAGCTGAGGGCGATTAGTTCCAGAGTTGAAAAGGGT 5202 Query 26341 CGGTGTAGCATGAGTATAA 26359 || | ||||||||| || Sbjct 5203 AGGAGAGGCATGAGTAAAA 5221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253021073952275