Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq2549 114 1e-20 >seq2549 Length=36390 Score = 114 bits (126), Expect = 1e-20 Identities = 182/256 (71%), Gaps = 4/256 (2%) Strand=Plus/Minus Query 138161 AAATGGTGTGAGATGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATG 138220 |||||| | || || ||| |||| ||| ||||| || ||||| || || || || || Sbjct 35052 AAATGGAATCAGGTGCTTTTTAACACAAATTGGACCAACTCCAGGCCCACCTCCGCCGTG 34993 Query 138221 TGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCACATG 138279 |||| ||| | | ||||| ||| | || || ||||| || || ||| |||| || Sbjct 34992 AGGAACACATAGAGATTTATGATTATTGATGTGGCAAACATCAGCTCCCATA-TCACCTG 34934 Query 138280 GTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCAT 138339 | || | || ||| | |||||||| | |||||||| || | ||| || |||||||||| Sbjct 34933 GGTTAGTTATACCAATTTGTGCATTCAAGTTTGCACCGTCCATATAAACTTGACCACCAT 34874 Query 138340 TGTCATGAACGATCTTACATATC-TGTCTGATGTTTGTTTCAAATACACCATGAGTCGAT 138398 | || ||||| ||||| || | | | ||||| | ||| || | || | ||| ||| Sbjct 34873 TATCGTGAACAATCTT-GGTAGCTTCTTTGATGCCTTCTTCGAAAATTCCGTAAGTGGAT 34815 Query 138399 GGATATGTAATCATAA 138414 || ||||||||||||| Sbjct 34814 GGGTATGTAATCATAA 34799 Score = 98.7 bits (108), Expect = 1e-15 Identities = 180/261 (69%), Gaps = 2/261 (1%) Strand=Plus/Minus Query 139260 AGTCCATCTGCACCATGATATGCTGCATAGAATCCAGACATATTTGCGAGCAGTGCTTGT 139319 || || |||| ||| ||||| |||| || | ||||||| ||||| | || || || Sbjct 33914 AGACCTTCTGGACCGTGATAGACTGCGTACATGGCAGACATGTTTGCTAAGAGGGCCTGA 33855 Query 139320 GCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTAGTTTGTAGT 139379 || || |||||||| || |||||||||||||||||||| || || | ||||| || Sbjct 33854 GCGGTACAGATGTTTGAAGTAGCTTTGTCTCTTCTAATATGTTGTTCACGGGTTTGAAGA 33795 Query 139380 GCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATTCTGCCAGGT 139439 || | ||| ||||||| | |||| | || || || ||||| | | || || Sbjct 33794 GCAAGTCTATATGCAGTACGACCTTTAGTATCAACGGATACGCCTACTAAACGACCTGGG 33735 Query 139440 ATCTTTCTCTTATACT-TGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCTCCGTATCC 139498 | || ||||| || | || ||||| || || ||||| || || || || || || || Sbjct 33734 ACTTTCCTCTT-TAGTGCATCAGTTGTAGCGAAAAATGCGGCGTGGGGTCCACCATAACC 33676 Query 139499 CATAGGAATACCAAACCTTTG 139519 | || || ||| || ||||| Sbjct 33675 AAGAGAAACACCGAATCTTTG 33655 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578953983585240