Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq5784 149 1e-30 seq2842 149 1e-30 seq4232 111 3e-19 seq253 109 1e-18 seq2055 86.0 1e-11 >seq5784 Length=6787 Score = 149 bits (164), Expect = 1e-30 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || |||| || | |||| ||||| ||| || |||||||| Sbjct 515 ACCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGA 574 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || | ||| |||| ||| || ||||||||||| || | || ||||| ||||| Sbjct 575 TAAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGG 634 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| |||||||| ||||| ||| | ||| |||| ||| ||||| || || Sbjct 635 AATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTAC 694 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 ||| || ||||| ||||||||||| || || |||||||| || |||||| || Sbjct 695 TTCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTA 746 >seq2842 Length=19016 Score = 149 bits (164), Expect = 1e-30 Identities = 172/232 (74%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 193133 ACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGA 193192 |||||| | | || || |||| || | |||| ||||| ||| || |||||||| Sbjct 516 ACCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGA 575 Query 193193 TAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGG 193252 ||| || | ||| |||| ||| || ||||||||||| || | || ||||| ||||| Sbjct 576 TAAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGG 635 Query 193253 TATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAAC 193312 |||||||| |||||||| ||||| ||| | ||| |||| ||| ||||| || || Sbjct 636 AATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTAC 695 Query 193313 TTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATTTTA 193364 ||| || ||||| ||||||||||| || || |||||||| || |||||| || Sbjct 696 TTCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTA 747 >seq4232 Length=1601 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | ||||| |||| || | |||| ||||| || || Sbjct 290 ATTTGCATACCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTG 231 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| || || | || || | |||||| |||||||| || | | || || Sbjct 230 TAGTCGGACAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGG 171 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| || || || | || |||||| |||||| Sbjct 170 TCCGGTGGGATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAA 111 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || |||||||| || || || || |||||||| Sbjct 110 GATTCGACTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 Score = 111 bits (122), Expect = 3e-19 Identities = 166/236 (70%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 193125 ATTTATATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTA 193184 |||| ||||||||||| | ||||| |||| || | |||| ||||| || || Sbjct 518 ATTTGCATACCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTG 459 Query 193185 TAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGA 193244 |||||||| || || | || || | |||||| |||||||| || | | || || Sbjct 458 TAGTCGGACAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGG 399 Query 193245 TCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAA 193304 || || || |||||||| || ||||| || || || | || |||||| |||||| Sbjct 398 TCTGGTGGGATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAA 339 Query 193305 GACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360 || || ||||| || || || || || |||||||| || || || || |||||||| Sbjct 338 GATTCGACTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 >seq253 Length=26518 Score = 109 bits (120), Expect = 1e-18 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 193179 ATATTATAGTCGGATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTC 193238 || ||||||||||| | || | ||| || ||||| || || || ||||| | ||| Sbjct 7793 ATGTTATAGTCGGAGAGGGTACGGCCATCTTCCAATTGCTTACCTGCGAAAATAAGTCTT 7734 Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || ||||| ||||| |||||||| |||||||| || || ||| | ||| || | Sbjct 7733 TGCTGATCTGGAGGAATTCCTTCCTTATCTTGGATCTTTTGTTTGACGTTTTCGATGGAG 7674 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 ||||| || || || || || || ||||||||||| |||| ||||| ||||| || ||| Sbjct 7673 TCGGAGGATTCGACCTCGAGGGTAATAGTTTTACCGGTTAAGGTTTTGACAAAGATCTGC 7614 Query 193359 ATTTTATTAGTAAAATA-ATTATTTTA 193384 || || || || | || ||| ||||| Sbjct 7613 ATGATA-TACTATATTAGATTTTTTTA 7588 >seq2055 Length=5446 Score = 86.0 bits (94), Expect = 1e-11 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 193239 TGTTGATCAGGAGGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTA 193298 || || || || || |||||||| || ||||| ||||| || | || |||||| Sbjct 16 TGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTTGCTTAACGTTGTCAATAGTG 75 Query 193299 TCGGAAGACTCAACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGC 193358 |||||||| ||||| || || || || || || ||||| || ||||| ||||| |||||| Sbjct 76 TCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTTTTGACAAAAATTTGC 135 Query 193359 ATTTT 193363 ||||| Sbjct 136 ATTTT 140 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899585385261840