Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq4232 127 4e-24 seq5784 125 1e-23 seq2842 125 1e-23 >seq4232 Length=1601 Score = 127 bits (140), Expect = 4e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||||||||| || | || ||||| | ||||| ||||| || || ||||| || Sbjct 738 ACCACCTCTAAGACGAAGCACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGA 679 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 |||| || |||| || | |||||| || ||||| || | | || ||||| ||||| Sbjct 678 CAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGG 619 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| || ||||| || || | || || || ||||| || || ||||| || Sbjct 618 GATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGAC 559 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||| || |||||||| || || |||| || |||| ||| || ||||| Sbjct 558 TTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 511 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || || || | ||||| ||||| || || || || Sbjct 284 ATACCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCG 225 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || |||| || | |||||| || ||||| || | | || ||||| ||| Sbjct 224 GACAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGT 165 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || | || || || ||||| || || ||||| Sbjct 164 GGGATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCG 105 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || |||||||| || || |||| || |||| ||| || ||||| Sbjct 104 ACTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 Score = 118 bits (130), Expect = 2e-21 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 ||||||||||| || || | || || || | ||||| ||||| || || || || Sbjct 512 ATACCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCG 453 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 || |||| || |||| || | |||||| || ||||| || | | || ||||| ||| Sbjct 452 GACAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGT 393 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || |||||||| || ||||| || || | || || || ||||| || || ||||| Sbjct 392 GGGATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCG 333 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || |||||||| || || |||| || |||| ||| || ||||| Sbjct 332 ACTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 >seq5784 Length=6787 Score = 125 bits (138), Expect = 1e-23 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || | || || || | ||||| ||||| ||| || || || || Sbjct 515 ACCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGA 574 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || | || || | ||| ||||| |||||||| || | || || || || || Sbjct 575 TAAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGG 634 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| |||||||| ||||| | ||| ||||| |||| ||| || |||||||| Sbjct 635 AATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTAC 694 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||| || || ||||||||||| || | || || | || ||||||||| || Sbjct 695 TTCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTA 746 >seq2842 Length=19016 Score = 125 bits (138), Expect = 1e-23 Identities = 167/232 (72%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 171842 ACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGA 171901 |||||| | || || | || || || | ||||| ||||| ||| || || || || Sbjct 516 ACCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGA 575 Query 171902 TAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGG 171961 ||| | || | || || | ||| ||||| |||||||| || | || || || || || Sbjct 576 TAAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGG 635 Query 171962 TATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTAC 172021 |||||||| |||||||| ||||| | ||| ||||| |||| ||| || |||||||| Sbjct 636 AATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTAC 695 Query 172022 TTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTTA 172073 ||| || || ||||||||||| || | || || | || ||||||||| || Sbjct 696 TTCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTA 747 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905066564754600