Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2747 138 3e-27 seq2855 109 2e-18 seq6058 95.1 4e-14 seq6002 86.0 2e-11 >seq2747 Length=22623 Score = 138 bits (152), Expect = 3e-27 Identities = 223/317 (70%), Gaps = 4/317 (1%) Strand=Plus/Plus Query 289026 TTTACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 |||||||| ||| |||||||| || || || || | || || |||| || | | ||| | Sbjct 4804 TTTACCAATAGCGTCAATTTCATCGATAAATATGATACTTGGCGAATGTTTTTTAGCATT 4863 Query 289086 TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGA 289145 ||||| || || | |||||| || || |||| ||||||| ||||||| ||||||||||| Sbjct 4864 AGCAAACAAATCGCGTACACGAGAAGCACCAACACCAACAAACATTTCAACAAATTCAGA 4923 Query 289146 AGCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGT 289205 | | |||| || ||||| ||| ||||| || || || | || ||||| || Sbjct 4924 ACCACTTACTGAAAAGAATGGAACACCAGCTTCACCGGCAGTAGCTTTAGCAAGAAGGGT 4983 Query 289206 CTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA 289265 ||||| |||||||||||||| ||| | | || |||| | || || ||| || Sbjct 4984 TTTACCAGTTCCAGGTGGTCCACTTAAAATGGCACCTCTTGGAATCTTGGCACCA--AGT 5041 Query 289266 CTTATATTTC-TCAGGGCTCTTTAAAAATTCT-ACAATTTCCTCAAGTTCATATTTTGCC 289323 ||| | | ||||||||| |||| || |||| |||| | ||| | ||| || Sbjct 5042 CTTTCGTAACGAGCGGGCTCTTTCAAAAAGCTGACAAATTCCATGATTTCTTCTTTGGCT 5101 Query 289324 TCATCACATCCTGCTAC 289340 |||||||| ||||| || Sbjct 5102 TCATCACAACCTGCAAC 5118 >seq2855 Length=12074 Score = 109 bits (120), Expect = 2e-18 Identities = 398/616 (65%), Gaps = 13/616 (2%) Strand=Plus/Minus Query 133046 GAACCCCTTCT-AACCCCAGACGATAATAGGTTTGTTATGTTCCCAATTAAGGACGACGA 133104 || || ||||| || |||| | | ||||||||||| | |||||||| || |||| Sbjct 5828 GAGCCTCTTCTTAAACCCAATCCA-AATAGGTTTGTGCTCTTCCCAATAAAATGGCACGA 5770 Query 133105 GATTTGGCAGATGTATAAAAAACAGCAAGATTTATTTTGGACT--TCAACTGAAGTAGAT 133162 || ||||| ||||| |||||| ||| || |||||| | || ||||| ||| Sbjct 5769 AATATGGCAAATGTACAAAAAAGCTGAAGCCAGTTTCTGGACTGTTGAA--GAAGTCGAT 5712 Query 133163 TTATCCAAAGACCCAGCCCACTGGGAAGCC---CTTACTGGGGATGAAAAACATTTTATT 133219 | || | ||| | ||||||||| | || |||| | |||| |||| || Sbjct 5711 CTGTCTCATGACACTCAACACTGGGAAAACAAGCTAACTGATAACGAAAGGTATTTCATC 5652 Query 133220 TCTATGATTTTAGCGTTTTTTGCTGCGAGTGATGGTATTGTTCTTGAAAATTTAGGAACA 133279 | || | || || || ||||| ||||||||||| || ||||| | | | Sbjct 5651 AAAAACATCCTCGCCTTCTTCGCTGCTAGTGATGGTATCGTCAACGAAAACCTTGTCGCT 5592 Query 133280 CGGTTTATGGGA--GAAGTTCAACTGGCCGAAGCCCGTGCCTTTTATGGGCTACAGATTG 133337 ||| || | ||||| ||| | | |||||||| ||||| || | || || Sbjct 5591 AACTTT--GGTACCGAAGTCCAAATCCCAGAAGCCCGCTGTTTTTACGGTTTCCAAATAA 5534 Query 133338 CGATGGAAAATATCCATTCTATCACATATTCTACTCTAATTGATACTTACATCAAAGATA 133397 ||| ||||||||||| | || |||| || ||||| || ||||||||||||| Sbjct 5533 TGATTGAAAATATCCACAGCGAAATGTACTCTATGCTTATTGACACATACATCAAAGATA 5474 Query 133398 CCGTCCAGAAGCACAAACTATTCAACGCCATTAGCGAATTTCCTTGTATTAAAAAGAAAT 133457 || | | || || |||| ||| | | | || || || || || || Sbjct 5473 ATGTTGAAAGAGACTTCTTACTCAATGCCGTACAAAACATCCCCTGCATAAAGAAAAAGG 5414 Query 133458 CTGACTGGGCTATTAAATGGATCCAGGACAAGCGTGCGAGTTTTGCTACTCGTCTCGTTG 133517 || ||||||| || ||||||| | ||| | || |||| | | | | || Sbjct 5413 CTAACTGGGCCCTTGAATGGATTGATGACTCTAGAAAAAGCTTTGGTGAAAGATTGGCTG 5354 Query 133518 CTTTTGCTGTAGTAGAGGGCAtttttttCAGTGGTGCGTTCTGCTCTATTTTTTGGCTTA 133577 ||||| ||| ||||| ||||| || |||||||| | ||| | | || || ||||| | Sbjct 5353 CTTTTTGTGTCGTAGAAGGCATATTCTTCAGTGGCTCCTTCGCCGCCATCTTCTGGCTCA 5294 Query 133578 AAAAGCGTGGTATTCTACCTGGACTGTGTTTTTCTAACGAACTTATTTCAAGGGACGAGG 133637 |||||||||| || | || || || ||| || ||||||||||| | || || || | Sbjct 5293 AAAAGCGTGGCCTTATGCCCGGTCTTACTTTCTCAAACGAACTTATCTGTAGAGATGAAG 5234 Query 133638 CACTTCACACCGAATT 133653 ||||||||||| || Sbjct 5233 GTCTTCACACCGATTT 5218 >seq6058 Length=9477 Score = 95.1 bits (104), Expect = 4e-14 Identities = 110/146 (75%), Gaps = 2/146 (1%) Strand=Plus/Plus Query 251843 CGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAGTCCAT 251902 |||| ||||||||| ||||||||||| ||||| || || || || || | ||| | Sbjct 757 CGATCGTCATACGAGAAGGAATAGCATGAGGATTAATAATAATATCTGGAACAACTCCTT 816 Query 251903 CAGCAGTGAAGGGCATATCCTTTTCCTCAATAA-TGTTTCCAATAGTTCCCTTTTGTCCG 251961 | |||| ||| ||||||| ||| || |||| | |||| ||||| |||||||| ||| Sbjct 817 CTGCAGAGAATGGCATAT-CTTCAGTTCTATAAGTAATTCCGATAGTACCCTTTTGCCCG 875 Query 251962 TGACGAGAACTGAACTTATCACCAAT 251987 ||||| ||| || ||||||||||| Sbjct 876 TGACGTGAAGCAAATTTATCACCAAT 901 Score = 91.5 bits (100), Expect = 4e-13 Identities = 128/176 (73%), Gaps = 4/176 (2%) Strand=Plus/Plus Query 251486 CACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGAG 251545 |||| || || ||||||||||| || ||||| || |||||||| | ||||||||| || | Sbjct 400 CACCATGAGATATCATACAATCGCGTTCCATCTCTCCGAAACGCAAACCACCATCACGGG 459 Query 251546 CCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCG-GCTA-TG 251603 ||||| ||| | ||||||||||| ||| | || ||| || ||||| || | || Sbjct 460 ATCTACCTTCGACCGGCTGACGAGTAAGAATTTGCACAGGTCC--ACGAGCGCGCGAGTG 517 Query 251604 TTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGA 251659 || || | |||||||| || | ||||||||| ||| || || | ||||| Sbjct 518 AATTTTGTCGTCAACCATATGTTTCAAACGCTGGTAATATGTTGGGCCAAGGAAGA 573 >seq6002 Length=22930 Score = 86.0 bits (94), Expect = 2e-11 Identities = 105/143 (73%), Gaps = 3/143 (2%) Strand=Plus/Minus Query 301816 ATTTCTTCAATACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAG 301875 ||||||| || |||||| ||||| | || ||||| || || | |||||||||||| Sbjct 10800 ATTTCTTTAAGACGGGGTACACCGAGTGTGACGTTT---TTAGAAGACACACCAGCAAAG 10744 Query 301876 TGGAAAGTATTCAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATA 301935 ||||| || || ||||| | ||||| | ||||| |||||| ||| || | | | Sbjct 10743 TGGAAGGTGTTAAGAGTCATCTGAGTTGCTGGCTGACCAATTGATTGAGCTGATAAAGTG 10684 Query 301936 CCAACCATTTCTCCTGGTGCTAC 301958 || |||||||||||||| | ||| Sbjct 10683 CCTACCATTTCTCCTGGGGATAC 10661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471701870522169