Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq253 165 7e-36 seq5784 143 2e-29 seq2842 143 2e-29 seq4232 136 4e-27 seq23 118 1e-21 >seq253 Length=26518 Score = 165 bits (182), Expect = 7e-36 Identities = 162/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | ||||| ||||||||||||||||||| ||||| || ||| || || Sbjct 7612 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 7671 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||| | | |||| || ||||||||||||||||| || |||||||| ||||| ||||| Sbjct 7672 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 7731 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||| | | || || || || || || |||| ||| | | | | || || |||||| Sbjct 7732 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGCCGTACCCTCTCCGACTATAAC 7791 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 || ||||||||||| || || |||||||| Sbjct 7792 ATCCAAAAGGAATCTACCCTCCACTTGGT 7820 >seq5784 Length=6787 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || |||||||| || || |||||||||||| | | Sbjct 742 ATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCT 683 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || |||||||| || ||||| || |||||||| ||||| ||||| Sbjct 682 GATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 623 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| |||||||| || || || || ||| | | | | || || || ||| Sbjct 622 CAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAAC 563 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| ||||| || || |||||||| Sbjct 562 ATTCAAAAAGAATCTACTCTTCACTTGGT 534 >seq2842 Length=19016 Score = 143 bits (158), Expect = 2e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| ||| | || || || || |||||||| || || |||||||||||| | | Sbjct 743 ATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCT 684 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || | | || | || |||||||| || ||||| || |||||||| ||||| ||||| Sbjct 683 GATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAG 624 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 ||||| ||||| |||||||| || || || || ||| | | | | || || || ||| Sbjct 623 CAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAAC 564 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 |||||||| ||||| || || |||||||| Sbjct 563 ATTCAAAAAGAATCTACTCTTCACTTGGT 535 >seq4232 Length=1601 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || ||||| || || || ||||| || ||||| ||| | || Sbjct 283 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 342 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| |||||||| |||||||| || || || || Sbjct 343 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 402 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| ||||| || || || | | |||| || || ||| Sbjct 403 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAC 462 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || ||||| ||||| || || ||||||||| Sbjct 463 ATCCAAAAAGAATCTACTCTTCACTTGGTG 492 Score = 136 bits (150), Expect = 4e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || ||||| || || || ||||| || ||||| ||| | || Sbjct 511 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 570 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| |||||||| |||||||| || || || || Sbjct 571 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 630 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| ||||| || || || | | |||| ||||| ||| Sbjct 631 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAAC 690 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || ||||| ||||| || || || |||||| Sbjct 691 ATCCAAAAAGAATCTACTCTTCATTTGGTG 720 Score = 131 bits (144), Expect = 2e-25 Identities = 155/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| ||||| |||| || ||||| || || || ||||| || ||||| ||| | || Sbjct 55 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 114 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || || ||||| |||||||| |||||||| || || || || Sbjct 115 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAG 174 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||||||||| ||||| || || || | | |||| || || || Sbjct 175 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAA 234 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTG 24913 || ||||| ||||| || || ||||||||| Sbjct 235 ATCCAAAAAGAATCTACTCTTCACTTGGTG 264 >seq23 Length=21893 Score = 118 bits (130), Expect = 1e-21 Identities = 414/638 (65%), Gaps = 20/638 (3%) Strand=Plus/Plus Query 139080 AATCGAGGCTATGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGC 139139 ||| ||||||| |||||| || || |||||||| | | |||| || || ||||| | Sbjct 4462 AATGGAGGCTAGGTTGCATACAGCAACTTCGTCCTTGGAGGTGTACTCAACGATTTCAGT 4521 Query 139140 ACACAAATTACTACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGC 139199 || | || | || || || || | |||||||| || ||| | |||||| || Sbjct 4522 GCATAGGTTTGAGCTTTTAATTGTTCCGAGGTTTTGTTGGTTAGATTTACCGTTACACGC 4581 Query 139200 ATCTTTGTAAAGCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAA 139259 |||||||| ||||| || || || |||||||| | || | |||| || | | Sbjct 4582 GTCTTTGTAGAGCATGTATGGAGTACCAGTTTCGATCTGGGAATCTAAGATAGCGT--AC 4639 Query 139260 CA-AGTCCCTAGCTTGT-AT---TTGACGCACGTAAAG-TTCGTCGCGCTCGTACTTTTC 139313 || ||| || | || || || || | | | | ||| | ||||||||| Sbjct 4640 CAGAGTTGCTGGGCAGTGATGCGTTTGCG-AGGAAGACCTTCAGTGTTTTCGTACTTTAG 4698 Query 139314 GTAGAGTTCGTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACA 139373 |||||| || ||||| |||||| | |||||| ||| | || | | ||| || Sbjct 4699 GTAGAGCTCATCGAACTTTTCACCCCAAACGTCAGCTAGACCAGGAGCTTCATGAGGGCA 4758 Query 139374 CATGAGCGACCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAA 139433 | | ||||| ||||||| || ||||| | |||||| || || |||||||| | Sbjct 4759 GAATAATGACCAGTCGCCGTTTTCCAAAACGCGGCGCATGAAAAGGTCAGGAATCCAAAG 4818 Query 139434 AGCGAACAGCAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAG 139493 || | | ||| || || || || ||||| ||| || | ||| ||| | Sbjct 4819 GCCGTAGAACAAGTCACGGGCGCGATTTTCTTCTTTACCGTGATTTTTTCTCAAGTTTAA 4878 Query 139494 GAAATCAAAAACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCGT-- 139551 || ||||||| ||||| ||||||||||| ||||| ||||| | |||||| ||| Sbjct 4879 AAATTCAAAAATGTCAGAATGCCATGGTTCAAGATAAATGGCGAAGGCGCCTGGACGTTT 4938 Query 139552 -TTGCCACCTTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAG 139610 ||||| ||||||||||||| ||| | | | |||||||| | | ||| || | | Sbjct 4939 GTTGCCGCCTTGATCGACGTATCGAGCGGTTGTGTTGAATACTTGGAGCATTGGAACGAT 4998 Query 139611 ACCGCTCGCTGTTCCGTTGGT----GCTACGGATGGGACTGTTGCGAGCTCGGACGTCAT 139666 ||| | | || ||||| || || | | | | | | |||||| |||| | | Sbjct 4999 TCCGTTGGAGGTACCGTTAGTTCCAGCAATGTAGGAGCCAGTTGCG----CGGATATTGT 5054 Query 139667 GTACATTGATGCCGATTCCGCCGCCAAATTTGGATATT 139704 | | ||| ||||||||| || || ||||||| ||| Sbjct 5055 GGATGCTGAGGCCGATTCCACCAGCAGATTTGGAAATT 5092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449863087230360