Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq253 111 1e-19 seq4232 104 2e-17 seq5784 98.7 8e-16 seq2842 98.7 8e-16 >seq253 Length=26518 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CGGAGCCTGA 110331 ||||| || ||||||||||| |||||||| ||||| |||||| |||| || | ||| Sbjct 7612 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTC- 7670 Query 110332 CGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCA 110391 ||| | ||| | || ||||| ||||| || || ||||| | || ||||| Sbjct 7671 CGACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCA 7730 Query 110392 ACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAA 110451 ||||||||||||| || ||||| || |||| |||| | | || | | || || || Sbjct 7731 GCAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGCCGTACCCTCTCCGACTATAA 7790 Query 110452 CATTCAAAAAGAATCTACGTTGCACATGGTGTTAAGACTGCGAGGGGG 110499 ||| ||||| |||||||| | ||| |||| ||||||| || || || Sbjct 7791 CATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTCCGTGGTGG 7838 >seq4232 Length=1601 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || ||| |||| ||||| ||||||||| | ||| || || | Sbjct 55 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 114 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || ||||||||| ||||| ||||| | || ||| || Sbjct 115 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAG 174 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | ||| || ||||| || || || | | | || || | || ||||| Sbjct 175 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAA 234 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || |||||||||||||| | ||| ||||| Sbjct 235 ATCCAAAAAGAATCTACTCTTCACTTGGTG 264 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || ||| |||| ||||| ||||||||| | ||| || || | Sbjct 283 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 342 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || ||||||||| ||||| ||||| | || || || Sbjct 343 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 402 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | ||| || ||||| || || || | | | || || | || |||||| Sbjct 403 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAC 462 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || |||||||||||||| | ||| ||||| Sbjct 463 ATCCAAAAAGAATCTACTCTTCACTTGGTG 492 Score = 104 bits (114), Expect = 2e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| || || || ||| |||| ||||| ||||||||| | ||| || || | Sbjct 511 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 570 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 || ||| | | | | || || ||||||||| ||||| ||||| | || || || Sbjct 571 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 630 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 ||| | || || | ||| || ||||| || || || | | | || || | ||||||||| Sbjct 631 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAAC 690 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || |||||||||||||| | || ||||| Sbjct 691 ATCCAAAAAGAATCTACTCTTCATTTGGTG 720 >seq5784 Length=6787 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 110268 TTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC 110327 ||| |||||| || ||||| || ||| | || || |||||||| ||| ||||| || Sbjct 747 TTAGAATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAAT 688 Query 110328 CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGG 110387 || ||| || ||| | || ||||| || ||| || || ||||| | || | Sbjct 687 CTTCTGATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAG 628 Query 110388 ATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATT 110447 |||| ||| | | |||| ||| ||||| || || || |||| | | || | | || | Sbjct 627 ATCAGCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACT 568 Query 110448 ACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||||||||||||| | ||| |||| Sbjct 567 ACAACATTCAAAAAGAATCTACTCTTCACTTGGT 534 >seq2842 Length=19016 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 110268 TTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC 110327 ||| |||||| || ||||| || ||| | || || |||||||| ||| ||||| || Sbjct 748 TTAGAATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAAT 689 Query 110328 CTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGG 110387 || ||| || ||| | || ||||| || ||| || || ||||| | || | Sbjct 688 CTTCTGATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAG 629 Query 110388 ATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATT 110447 |||| ||| | | |||| ||| ||||| || || || |||| | | || | | || | Sbjct 628 ATCAGCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACT 569 Query 110448 ACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||||||||||||||||| | ||| |||| Sbjct 568 ACAACATTCAAAAAGAATCTACTCTTCACTTGGT 535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412810721641541