Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq253 134 9e-27 seq5784 123 2e-23 seq2842 123 2e-23 seq4232 95.1 8e-15 >seq253 Length=26518 Score = 134 bits (148), Expect = 9e-27 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 34763 CTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCA 34822 || ||||||| ||| | ||| ||||| || ||||||||||| || ||| | || || Sbjct 7826 CTTAGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAGAGGGTACGGCCA 7767 Query 34823 TCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34882 || |||| |||||| || ||||| || |||| |||||| ||| | || | || ||||| Sbjct 7766 TCTTCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTA 7707 Query 34883 TCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 || | || |||||||||||| | | || || || || ||||| || | ||| || Sbjct 7706 TCTTGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATA 7647 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGATA 34981 || || || || | ||| || |||||||||||||||||| Sbjct 7646 GTTTTACCGGTTAAGGTTTTGACAAAGATCTGCATGATA 7608 >seq5784 Length=6787 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || || || |||||||| ||||| |||| | |||| |||| Sbjct 531 AGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCT 590 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||| || |||| |||||||| ||| | || | || ||||| || Sbjct 591 TCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCT 650 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||||||||| || || || || || ||| | || || || | |||||||| Sbjct 651 TGAATTTTTTGTTTAAC--ATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGG 708 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || || || ||||||||||| |||||||| Sbjct 709 TTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 742 >seq2842 Length=19016 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || || || |||||||| ||||| |||| | |||| |||| Sbjct 532 AGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCCATCT 591 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || |||||||| ||||| || |||| |||||||| ||| | || | || ||||| || Sbjct 592 TCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTTATCT 651 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||||||||| || || || || || ||| | || || || | |||||||| Sbjct 652 TGAATTTTTTGTTTAAC--ATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTATGG 709 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || || || ||||||||||| |||||||| Sbjct 710 TTTTACCTGTAAGAGTCTTTACAAAAATCTGCAT 743 >seq4232 Length=1601 Score = 95.1 bits (104), Expect = 8e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || || || || ||||| ||||| || | | || | || Sbjct 494 AGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGTACGGCCGTCT 435 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || ||||| ||||| || |||||||||||| | || | || |||||||| Sbjct 434 TCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCT 375 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || |||||| | || | || | ||||| |||| ||| |||||| Sbjct 374 TGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTC 315 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||| ||||| Sbjct 314 TTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 Score = 87.8 bits (96), Expect = 1e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34787 TCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAG 34846 || || || ||||| || || || | | || | || || ||||| || ||||| ||| Sbjct 701 TCTTTTTGGATGTTGTAATCAGACAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAG 642 Query 34847 ATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGAT 34906 || || |||||||||||| | || | || |||||||| | || || || |||||| Sbjct 641 ATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTG 582 Query 34907 GCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACA 34966 | || | || | ||||| |||| ||| |||||||| || || || ||||| || Sbjct 581 TCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACG 522 Query 34967 AAGATCTGCAT 34977 ||||| ||||| Sbjct 521 AAGATTTGCAT 511 Score = 86.0 bits (94), Expect = 4e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||||| || || || || || || ||||| || | | || | || Sbjct 266 AGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGTACGGCCGTCT 207 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || ||||| || ||||| ||||| || ||||||||||| | || | || |||||||| Sbjct 206 TCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCT 147 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || || |||||| | || | || | ||||| |||| ||| |||||| Sbjct 146 TGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTC 87 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || || || || ||||| || ||||| ||||| Sbjct 86 TTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325668439908803