Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq5784 102 7e-17 seq2842 102 7e-17 seq253 98.7 8e-16 seq4232 95.1 1e-14 >seq5784 Length=6787 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 107551 TTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGG 107610 ||| |||||| |||||||| || ||| | ||||| |||||||| ||| ||||| || Sbjct 747 TTAGAATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAAT 688 Query 107611 CTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGG 107670 || ||| || ||| | || |||||||| ||| ||||| ||||| | || | Sbjct 687 CTTCTGATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAG 628 Query 107671 ATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACT 107730 ||||||| | | |||| ||| ||||| || || || || | | || | | |||| Sbjct 627 ATCAGCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACT 568 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||| || ||||| | ||| |||| Sbjct 567 ACAACATTCAAAAAGAATCTACTCTTCACTTGGT 534 >seq2842 Length=19016 Score = 102 bits (112), Expect = 7e-17 Identities = 151/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 107551 TTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGG 107610 ||| |||||| |||||||| || ||| | ||||| |||||||| ||| ||||| || Sbjct 748 TTAGAATGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAAT 689 Query 107611 CTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGG 107670 || ||| || ||| | || |||||||| ||| ||||| ||||| | || | Sbjct 688 CTTCTGATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAG 629 Query 107671 ATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACT 107730 ||||||| | | |||| ||| ||||| || || || || | | || | | |||| Sbjct 628 ATCAGCAACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACT 569 Query 107731 ACAACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||||||||||| || ||||| | ||| |||| Sbjct 568 ACAACATTCAAAAAGAATCTACTCTTCACTTGGT 535 >seq253 Length=26518 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||||||||| ||||| || ||||| |||||| |||| || | | Sbjct 7612 ATGCAGATCTTTGTCAAAACCTTAACCGGTAAAACTATTACCCTCGAGGTCGAATCCTCC 7671 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || | ||| | || ||||||||||| ||||| ||||| | || |||||| Sbjct 7672 GACTCCATCGAAAACGTCAAACAAAAGATCCAAGATAAGGAAGGAATTCCTCCAGATCAG 7731 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || |||||||||| || ||||| || |||| || | | || | | ||||| ||| Sbjct 7732 CAAAGACTTATTTTCGCAGGTAAGCAATTGGAAGATGGCCGTACCCTCTCCGACTATAAC 7791 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 || |||||||| ||||| | ||| |||| | ||| | || || || Sbjct 7792 ATCCAAAAGGAATCTACCCTCCACTTGGTCCTAAGACTCCGTGGTGG 7838 >seq4232 Length=1601 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||| || || || ||| |||||||||| ||||||||| | ||| || || | Sbjct 283 ATGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCC 342 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | | || || || |||||| || || ||||| | || || ||| Sbjct 343 GACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAG 402 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || | || || | ||| || ||||| || || |||| | || || | ||||||||| Sbjct 403 CAACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAC 462 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || ||||| || ||||| | ||| ||||| Sbjct 463 ATCCAAAAAGAATCTACTCTTCACTTGGTG 492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398846966134393