Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq4232 107 3e-18 seq5784 105 1e-17 seq2842 105 1e-17 >seq4232 Length=1601 Score = 107 bits (118), Expect = 3e-18 Identities = 163/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || ||||||| || || ||||| |||| || ||| | || Sbjct 512 TGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCG 571 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | || || || | || || ||| || ||||| || ||||| || || | Sbjct 572 ACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAGC 631 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| ||||| || |||||| | || || | || || | ||||| || | Sbjct 632 AACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCTGATTACAACA 691 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTAAATA 146263 | ||||||||||| ||| | ||||| || | || | ||||| ||| |||| Sbjct 692 TCCAAAAAGAATCTACTCTTCATTTGGTGCTTCGTCTTAGAGGTGGTCAATA 743 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || ||||||| || || ||||| |||| || ||| | || Sbjct 56 TGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCG 115 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | || || || | || || ||| || ||||| || ||||| || || | Sbjct 116 ACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCGGACCAGC 175 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| ||||| || |||||| | || || | || || | || || || | Sbjct 176 AACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAAAA 235 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | || || || | || | ||||| |||| Sbjct 236 TCCAAAAAGAATCTACTCTTCACTTGGTGCTTCGTCTCAGAGGTGGTA 283 Score = 96.9 bits (106), Expect = 5e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| ||| | || || ||||||| || || ||||| |||| || ||| | || Sbjct 284 TGCAAATCTTCGTTAAGACTCTAACAGGCAAGACCATTACCCTTGAAGTCGAATCTTCCG 343 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | |||||| | || || || | || || ||| || ||||| || ||||| || || | Sbjct 344 ACACTATTGACAACGTCAAGCAGAAGATTCAAGACAAGGAAGGAATCCCACCAGACCAGC 403 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | ||||| ||||| || |||||| | || || | || || | || || || | Sbjct 404 AACGTCTCATCTTTGCCGGCAAACAACTTGAAGACGGCCGTACTTTGTCCGACTACAACA 463 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGGTA 146259 | ||||||||||| ||| | || || || | || | ||||| |||| Sbjct 464 TCCAAAAAGAATCTACTCTTCACTTGGTGCTTCGTCTCAGAGGTGGTA 511 >seq5784 Length=6787 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || | ||||| ||||| || || | || |||||| | | Sbjct 741 TGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCTG 682 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || |||| | ||||| ||| | ||||| ||| ||| ||||| ||||| || ||||| | Sbjct 681 ATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAGC 622 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| ||||| ||| |||| ||| | || ||| | || || || | Sbjct 621 AACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAACA 562 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||||||||| ||| | || || || Sbjct 561 TTCAAAAAGAATCTACTCTTCACTTGGT 534 >seq2842 Length=19016 Score = 105 bits (116), Expect = 1e-17 Identities = 148/208 (71%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 |||| || || |||| || | ||||| ||||| || || | || |||||| | | Sbjct 742 TGCAGATTTTTGTAAAGACTCTTACAGGTAAAACCATAACCCTCGAAGTAGAATCTTCTG 683 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 || |||| | ||||| ||| | ||||| ||| ||| ||||| ||||| || ||||| | Sbjct 682 ATTCTATCGAGAATGTTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCAGATCAGC 623 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 || | | |||||||| ||||| ||| |||| ||| | || ||| | || || || | Sbjct 622 AACGCTTGATTTTTGCCGGTAAGCAACTAGAAGATGGCCGCACCTTATCCGACTACAACA 563 Query 146212 TACAAAAAGAATCGACTATCCATTTAGT 146239 | ||||||||||| ||| | || || || Sbjct 562 TTCAAAAAGAATCTACTCTTCACTTGGT 535 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 786106091210040