Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq5784 167 2e-36 seq2842 167 2e-36 seq4232 141 7e-29 seq253 134 1e-26 >seq5784 Length=6787 Score = 167 bits (184), Expect = 2e-36 Identities = 174/227 (77%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||||||||||||||| || || | | |||||| Sbjct 527 ACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCC 586 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || || ||| | ||||| | ||||||||| || ||||| || || || Sbjct 587 ATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTT 646 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||||||||| ||| | || | || |||||| ||||||||| || ||||| Sbjct 647 ATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTAT 706 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAA-AACGT 29796 ||||| || || | || || ||||| ||||||||| ||| ||||| Sbjct 707 GGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTAAGAACGT 753 >seq2842 Length=19016 Score = 167 bits (184), Expect = 2e-36 Identities = 174/227 (77%), Gaps = 1/227 (0%) Strand=Plus/Plus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || ||||| ||||| || ||||||||||||||||| || || | | |||||| Sbjct 528 ACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTGTAGTCGGATAAGGTGCGGCC 587 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 ||| || ||||| || || ||| | ||||| | ||||||||| || ||||| || || || Sbjct 588 ATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGATCTGGAGGAATTCCTTCCTT 647 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||||| | ||||||||| ||| | || | || |||||| ||||||||| || ||||| Sbjct 648 ATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAAGATTCTACTTCGAGGGTTAT 707 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTTAA-AACGT 29796 ||||| || || | || || ||||| ||||||||| ||| ||||| Sbjct 708 GGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATTCTAAGAACGT 754 >seq4232 Length=1601 Score = 141 bits (156), Expect = 7e-29 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 29556 TTGTCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATC 29615 ||| || || || | ||| |||||||||||||| || ||||||||||| ||||| ||||| Sbjct 741 TTGACCACCTCTAAGACGAAGCACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATC 682 Query 29616 CGCAATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGG 29675 | | || || || || ||||||||||| ||| | || | | |||||| || || Sbjct 681 AGACAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGG 622 Query 29676 CGGAATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTC 29735 || || || || |||||||| | || || ||||| | || | |||||| ||| ||| Sbjct 621 TGGGATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTC 562 Query 29736 TACTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 |||||||| || || || ||||| |||| || ||||| || || ||||| Sbjct 561 GACTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 511 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| |||||||| ||||| || ||||||||||| || || || || | Sbjct 281 CCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGGAC 222 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || ||||||||||| ||| | || | | |||||| ||||| || Sbjct 221 AAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTGGG 162 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || || ||||| | || | |||||| ||| ||| ||| Sbjct 161 ATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACT 102 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| |||| || ||||| || || ||||| Sbjct 101 TCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || || | ||| |||||||| ||||| || ||||||||||| ||||| || || | Sbjct 509 CCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGGAC 450 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | || || || || ||||||||||| ||| | || | | |||||| || || || Sbjct 449 AAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGG 390 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || |||||||| | || || ||||| | || | |||||| ||| ||| ||| Sbjct 389 ATTCCTTCCTTGTCTTGAATCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACT 330 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || ||||| |||| || ||||| || || ||||| Sbjct 329 TCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 >seq253 Length=26518 Score = 134 bits (148), Expect = 1e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 29575 AGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCA 29634 || ||||| || || || ||||| ||||| |||||||| || | | ||| || ||| Sbjct 7823 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAGAGGGTACGGCCATCT 7764 Query 29635 TCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCT 29694 || | ||| || || || | || | |||||||||||| || ||||| || || || ||| Sbjct 7763 TCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT 7704 Query 29695 TGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTT 29754 || | ||||||||||| |||| | | ||| || ||| || || || || |||||| Sbjct 7703 TGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTT 7644 Query 29755 TTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || ||||||||||| ||||| |||||||| Sbjct 7643 TTACCGGTTAAGGTTTTGACAAAGATCTGCAT 7612 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385190387650317