Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq5784 181 2e-40 seq2842 181 2e-40 seq4232 167 5e-36 seq253 131 3e-25 seq2055 91.5 3e-13 >seq5784 Length=6787 Score = 181 bits (200), Expect = 2e-40 Identities = 183/237 (77%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 82575 TATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTA 82634 || |||| ||| || | | ||| ||||| ||||| |||||||||||||| || || || Sbjct 508 TAACACC-ACCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTG 566 Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 || || |||| | | || ||||||||||| || || ||||| || | | ||| ||| Sbjct 567 TAGTCGGATAAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGA 626 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 |||||||| |||||||||||||||||||| ||| ||| ||||| || || | |||| | Sbjct 627 TCTGGAGGAATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAA 686 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||||||| | ||||| || || ||||| | ||||||||||| ||||||||| Sbjct 687 GATTCTACTTCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATT 743 >seq2842 Length=19016 Score = 181 bits (200), Expect = 2e-40 Identities = 183/237 (77%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 82575 TATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTA 82634 || |||| ||| || | | ||| ||||| ||||| |||||||||||||| || || || Sbjct 509 TAACACC-ACCACCACGTAGACGGAGAACCAAGTGAAGAGTAGATTCTTTTTGAATGTTG 567 Query 82635 TAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA 82694 || || |||| | | || ||||||||||| || || ||||| || | | ||| ||| Sbjct 568 TAGTCGGATAAGGTGCGGCCATCTTCTAGTTGCTTACCGGCAAAAATCAAGCGTTGCTGA 627 Query 82695 TCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTA 82754 |||||||| |||||||||||||||||||| ||| ||| ||||| || || | |||| | Sbjct 628 TCTGGAGGAATTCCTTCCTTATCTTGAATTTTTTGTTTAACATTCTCGATAGAATCAGAA 687 Query 82755 GGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | ||||||||| | ||||| || || ||||| | ||||||||||| ||||||||| Sbjct 688 GATTCTACTTCGAGGGTTATGGTTTTACCTGTAAGAGTCTTTACAAAAATCTGCATT 744 >seq4232 Length=1601 Score = 167 bits (184), Expect = 5e-36 Identities = 176/229 (77%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| ||||| | ||| || || || || |||||||||||||| || || || |||||||| Sbjct 738 ACCACCTCTAAGACGAAGCACCAAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGA 679 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | | | | |||||||| |||||||| || |||||||| || | ||| || ||||| || Sbjct 678 CAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGG 619 Query 82703 TATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 ||||||||||| ||||||||||| ||||| || || ||||| || || || ||| | Sbjct 618 GATTCCTTCCTTGTCTTGAATCTTCTGCTTG-ACGTTGTCAATAGTGTCGGAAGATTCGA 560 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | || || ||||||||||| | ||||| || || || ||||| Sbjct 559 CTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 511 Score = 165 bits (182), Expect = 2e-35 Identities = 176/230 (77%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | ||| || || ||||| |||||||||||||| || || || || || | Sbjct 511 TACCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATGTTGTAGTCGG 452 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | |||||||| |||||||| || |||||||| || | ||| || ||||| | Sbjct 451 ACAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTG 392 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | ||||||||||| ||||||||||| ||||| || || ||||| || || || ||| Sbjct 391 GGATTCCTTCCTTGTCTTGAATCTTCTGCTTG-ACGTTGTCAATAGTGTCGGAAGATTCG 333 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | || || ||||||||||| | ||||| || || || ||||| Sbjct 332 ACTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 283 Score = 159 bits (176), Expect = 7e-34 Identities = 175/230 (76%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| | ||| || || ||||| |||||||||||||| || || || || || | Sbjct 283 TACCACCTCTGAGACGAAGCACCAAGTGAAGAGTAGATTCTTTTTGGATTTTGTAGTCGG 224 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | | | | |||||||| |||||||| || |||||||| || | ||| || || || | Sbjct 223 ACAAAGTACGGCCGTCTTCAAGTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCCGGTG 164 Query 82702 GTATTCCTTCCTTATCTTGAATCTT-TGCTTTTACATTTTCAATCGTATCATTAGGTTCT 82760 | ||||||||||| ||||||||||| ||||| || || ||||| || || || ||| Sbjct 163 GGATTCCTTCCTTGTCTTGAATCTTCTGCTTG-ACGTTGTCAATAGTGTCGGAAGATTCG 105 Query 82761 ACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| | || || ||||||||||| | ||||| || || || ||||| Sbjct 104 ACTTCAAGGGTAATGGTCTTGCCTGTTAGAGTCTTAACGAAGATTTGCAT 55 >seq253 Length=26518 Score = 131 bits (144), Expect = 3e-25 Identities = 158/215 (73%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82599 AGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCT 82658 || || ||||| || |||||||| || || || ||||| || || || | | || ||| Sbjct 7823 AGGACCAAGTGGAGGGTAGATTCCTTTTGGATGTTATAGTCGGAGAGGGTACGGCCATCT 7764 Query 82659 TCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCT 82718 || | ||| || || || || || |||||||| ||||||||||| ||||||||||||||| Sbjct 7763 TCCAATTGCTTACCTGCGAAAATAAGTCTTTGCTGATCTGGAGGAATTCCTTCCTTATCT 7704 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 || |||||| ||| || ||||| || | || | ||| || || | || || || Sbjct 7703 TGGATCTTTTGTTTGACGTTTTCGATGGAGTCGGAGGATTCGACCTCGAGGGTAATAGTT 7644 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 || || || || || || ||||| |||||||| || Sbjct 7643 TTACCGGTTAAGGTTTTGACAAAGATCTGCATGAT 7609 >seq2055 Length=5446 Score = 91.5 bits (100), Expect = 3e-13 Identities = 103/138 (75%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 82674 GCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTT 82733 |||||||| || | ||| || ||||| || ||||||||||| |||||||| ||| || Sbjct 1 GCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTTGCTTA 60 Query 82734 ACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTC 82793 || || ||||| || || || ||| || || | || || ||||||||||| | || Sbjct 61 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTT 120 Query 82794 TTTACAAATATCTGCATT 82811 || ||||| || |||||| Sbjct 121 TTGACAAAAATTTGCATT 138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981749998620443