Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4232 104 2e-17 seq2055 93.3 4e-14 >seq4232 Length=1601 Score = 104 bits (114), Expect = 2e-17 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Minus Query 133455 AAATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGA 133512 ||||| | || || ||||| || || |||||||| || || ||| ||| || | Sbjct 716 AAATGAAGAGTAGATTCTTTTTGGATGTTGTAATCAGACAAAGT--ACGGCCGTCTTCAA 659 Query 133513 GCTGCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGA 133572 | || ||||| || | ||||| || |||||||| || ||||| ||||||||||| | Sbjct 658 GTTGTTTGCCGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAA 599 Query 133573 TCTTTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGC 133632 |||| ||||||| | |||| ||||||| | || || || | ||| | ||| |||| Sbjct 598 TCTTCTGCTTGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTGC 539 Query 133633 CGGTCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| || ||||| Sbjct 538 CTGTTAGAGTCTTAACGAAGATTTGCAT 511 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || ||||| || || ||||| ||| || || ||| ||| || || || |||| Sbjct 251 GTAGATTCTTTTTGGATTTTGTAGTCGGACAAAGT--ACGGCCGTCTTCAAGTTGTTTGC 194 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| || |||||||| || ||||| ||||||||||| ||||| |||| Sbjct 193 CGGCAAAGATGAGACGTTGCTGGTCCGGTGGGATTCCTTCCTTGTCTTGAATCTTCTGCT 134 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||||| | || || || | ||| | ||| ||||| || |||| Sbjct 133 TGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTGCCTGTTAGAG 74 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 73 TCTTAACGAAGATTTGCAT 55 Score = 102 bits (112), Expect = 8e-17 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGA--GTCCTCGAGCTGCTTGC 133521 || || ||||| || || ||||| ||| || || ||| ||| || || || |||| Sbjct 479 GTAGATTCTTTTTGGATGTTGTAGTCGGACAAAGT--ACGGCCGTCTTCAAGTTGTTTGC 422 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || | ||||| || |||||||| || ||||| ||||||||||| ||||| |||| Sbjct 421 CGGCAAAGATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATCTTCTGCT 362 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||||| | || || || | ||| | ||| ||||| || |||| Sbjct 361 TGACGTTGTCAATAGTGTCGGAAGATTCGACTTCAAGGGTAATGGTCTTGCCTGTTAGAG 302 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || ||||| || ||||| Sbjct 301 TCTTAACGAAGATTTGCAT 283 >seq2055 Length=5446 Score = 93.3 bits (102), Expect = 4e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||| || |||||||| || ||||| ||||||||||| || |||||||| | | Sbjct 7 ATGAGACGTTGCTGGTCTGGTGGGATTCCTTCCTTGTCTTGAATTTTTTGCTTAACGTTG 66 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 |||| ||||||| | || || || | ||||| ||| ||||| || |||||||| || Sbjct 67 TCAATAGTGTCGGAAGATTCAACCTCAAGGGTGATGGTCTTGCCTGTAAGAGTTTTGACA 126 Query 133650 AAAATCTGCAT 133660 ||||| ||||| Sbjct 127 AAAATTTGCAT 137 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483383715581880