Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Smittium_20culicis_20[genbank_20GCA_5F001970855.1_202017-01-25] 6,137 sequences; 77,124,806 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq23 168 2e-36 seq6002 96.9 8e-15 >seq23 Length=21893 Score = 168 bits (186), Expect = 2e-36 Identities = 451/683 (66%), Gaps = 10/683 (1%) Strand=Plus/Minus Query 110465 TATTCATGCTACTCCTACCCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTG 110524 || |||||| |||||||||| || ||| | ||||||||| | || | || || Sbjct 5218 TACTCATGCCTCTCCTACCCTTTTCAACTCTGGAACTAATCGCCCTCAGCTAAGCTCCTG 5159 Query 110525 CTTTCTT-CTAGGAATTAACGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAA 110583 |||||| ||| ||| | ||||| ||||| ||||||||||||||| || | | Sbjct 5158 -TTTCTTGCTAACAATGCAAGATGACTCTATCGAAGGTATTTATGATACTATCTCCCAGT 5100 Query 110584 CTGCTCTTATTTCTAAAAACTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAA 110643 |||| ||||| ||| |||| ||||| || | | | || |||| ||| ||| Sbjct 5099 GTGCTAAAATTTCCAAATCTGCTGGTGGAATCGGCCTCAGCATCCACAATATCCGCGCAA 5040 Query 110644 AAGGAGCAAATATCGCAACAGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAG 110703 || | | || || | | || ||| | || | ||| | ||||||||| | || Sbjct 5039 CTGGCTCCTACATTGCTGGAACTAACGGTACCTCCAACGGAATCGTTCCAATGCTCCAAG 4980 Query 110704 TCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGAAAT---GGCTCATTTG 110760 | |||||| || || ||| || ||||||| || || | | | ||| | || | Sbjct 4979 TATTCAACACAACCGCTCGATACGTCGATCAAGGCGGCAACAAACGTCCAGGCGCCTTCG 4920 Query 110761 CTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTAGAACTTC-GTAAAAAT 110819 | || ||||| ||||| |||||||| || || |||||||| ||| ||||| | |||||| Sbjct 4919 CCATTTATCTTGAACCATGGCATTCTGACATTTTTGAATTTTTA-AACTTGAGAAAAAAT 4861 Query 110820 CAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTA 110879 || || |||||| | | || ||||| || || || | | |||||| | || | Sbjct 4860 CACGGTAAAGAAGAAAATCGCGCCCGTGACTTGTTCTACGGCCTTTGGATTCCTGACCTT 4801 Query 110880 TTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGTCCTCATCGTTCTCCT 110939 |||||| || ||| ||||| ||| ||||| | | || |||||| ||||| Sbjct 4800 TTCATGCGCCGCGTTTTGGAAAACGGCGACTGGTCATTATTCTGCCCTCATGAAGCTCCT 4741 Query 110940 GGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAA---A 110996 |||||| |||| || | || || |||| || || || ||| ||| || ||||| Sbjct 4740 GGTCTAGCTGACGTTTGGGGTGAAAAGTTCGATGAGCTCTACCTAAAGTACGAAAACACT 4681 Query 110997 GAAGGCAAGTTTCGCAAACAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCA 111056 ||||| |||||||| || | || || |||| |||| | ||| | || || Sbjct 4680 GAAGGTCTTCCTCGCAAACGCATCACTGCCCAGCAACTCTGGTACGCTATCTTAGATTCC 4621 Query 111057 CAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAAT 111116 || | |||||||| ||||| || || | || ||||| ||| | |||||||| Sbjct 4620 CAGATCGAAACTGGTACTCCATACATGCTCTACAAAGACGCGTGTAACGGTAAATCTAAC 4561 Query 111117 CAAATGAATTTAGGAACAATTAA 111139 ||| || | ||||||||||| Sbjct 4560 CAACAAAACCTCGGAACAATTAA 4538 >seq6002 Length=22930 Score = 96.9 bits (106), Expect = 8e-15 Identities = 172/246 (70%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 305345 CAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAAGTATTATCTGGATTG 305404 ||||| || || ||||||||||||||||||| ||| |||||||| | | | Sbjct 8804 CAACCTTCTCTCCATAAAATGTCTATGATGGGTCACCGCGTCAAAGTTATGCCCTACTCA 8863 Query 305405 ACATTTCGATTAAATGTAAGTGCTTGTA----CGCCTTATAATGCGGATTTTGATGGAGA 305460 ||||| |||| ||| | | || ||| | ||||||||||| ||||||||||| || Sbjct 8864 ACATTCAGATTGAATCT---TTCT-GTAACATCTCCTTATAATGCAGATTTTGATGGTGA 8919 Query 305461 TGAAATGAATATGCATGTACCTCAATCAAAGGTTACAATGACTGAATTATCAGAAATATG 305520 |||||||||| | ||| | || ||||| ||| || ||||| | | ||||| || Sbjct 8920 TGAAATGAATTTACATCTTCCACAATCTGAGGAAACTCGTGCTGAAATTACTGAAATTTG 8979 Query 305521 TTCTGTATCAAAACTTATCATTTCTCCTGCTAT-AAATGCTCCAATAATCGAATTTGTAC 305579 | || | |||| ||||||||||| || || |||| || | || | |||||| Sbjct 8980 TATGGTTCCGAAACAAATCATTTCTCC-GCAATCAAATATGCCTGTCATGGGTATTGTAC 9038 Query 305580 AAGATA 305585 |||||| Sbjct 9039 AAGATA 9044 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186719480538657